Browse Element(s) Details

OsAffx.22167.1.S1_at

Description

gb:NM_188174.1
DB_XREF= gi:34903431
GEN=OSJNBa0077F02.28
TID=OsAffx.22167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0077F02.28), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g19920	1/11	retrotransposon protein, putative, Ty1-copia subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g19890	NA	NA	6	+	11367536..11370862	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19900	OsAffx.435.1.S1_at	1/11	6	+	11381885..11389124	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19910	OsAffx.15503.1.S1_x_at	10/11	6	+	11390392..11391975	hypothetical protein
LOC_Os06g19910	OsAffx.15503.1.S1_at	9/11	6	+	11390392..11391975	hypothetical protein
LOC_Os06g19910	OsAffx.30326.1.S1_x_at	3/11	6	+	11390392..11391975	hypothetical protein
LOC_Os06g19920	OsAffx.7163.1.S1_at	1/11	6	+	11392976..11397608	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920	OsAffx.22167.1.S1_x_at	1/11	6	+	11392976..11397608	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920	OsAffx.22167.1.S1_at	1/11	6	+	11392976..11397608	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19930	Os.17297.1.S1_at	1/11	6	+	11411055..11415473	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940	OsAffx.15504.1.S1_at	10/11	6	+	11415740..11421385	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940	OsAffx.20733.1.A1_x_at	4/11	6	+	11415740..11421385	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940	Os.45173.1.S1_x_at	3/11	6	+	11415740..11421385	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940	OsAffx.20691.1.A1_x_at	2/11	6	+	11415740..11421385	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22167.1.S1_at--345--195	1	Chr07:13106115..13106139 (25 bp)	ACTGGAGGGATATAGCAGTTCTAAT	NONE
OsAffx.22167.1.S1_at--649--651	1	Chr07:13106123..13106147 (25 bp)	GATATAGCAGTTCTAATTGGTTCTC	NONE
OsAffx.22167.1.S1_at--1091--1001	1	Chr07:13106127..13106151 (25 bp)	TAGCAGTTCTAATTGGTTCTCTGAT	NONE
OsAffx.22167.1.S1_at--262--345	1	Chr07:13106130..13106154 (25 bp)	CAGTTCTAATTGGTTCTCTGATGTG	NONE
OsAffx.22167.1.S1_at--1026--987	1	Chr07:13106208..13106232 (25 bp)	TACATGGAGGTCTTGTAAGCAGACT	NONE
OsAffx.22167.1.S1_at--967--83	1	Chr07:13106211..13106235 (25 bp)	ATGGAGGTCTTGTAAGCAGACTATT	NONE
OsAffx.22167.1.S1_at--1022--913	4	Chr07:13106303..13106327 (25 bp)	TGCGTGATCTATTGATGGATATGCT	NONE
OsAffx.22167.1.S1_at--2--5	1	Chr07:13106313..13106337 (25 bp)	ATTGATGGATATGCTTGTGGTTGAA	NONE
OsAffx.22167.1.S1_at--73--27	1	Chr07:13106321..13106345 (25 bp)	ATATGCTTGTGGTTGAAATACCGGG	NONE
OsAffx.22167.1.S1_at--1116--755	1	Chr07:13106344..13106368 (25 bp)	GGGCCGGCTATTCTTATGAATTGTG	NONE
OsAffx.22167.1.S1_at--525--469	1	Chr07:13106361..13106386 (25 bp)	GAATTGTGACAATCAAATGGAATTT	NONE

Target Sequence

ACTGGAGGGATATAGCAGTTCTAATTGGTTCTCTGATGTGGATGAGATCAAAGCTATTAGTGGATATGTTTTCACACTAG
GTGGTGCTGCTATTACATGGAGGTCTTGTAAGCAGACTATTTTGACGAGGTCAACCATCGAAGCAGAGCTGACGGCACTA
GATACTGCTGCTGTTGAGGTAGAATGGCTGCGTGATCTATTGATGGATATGCTTGTGGTTGAAATACCGGGGCCGGCTAT
TCTTATGAATTGTGACAATCAAATGGAATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis