Browse Element(s) Details


OsAffx.22176.2.S1_at

Description tigr:9629.m01717
TID=OsAffx.22176.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1721411/11transporter, putative, expressed
LOC_Os03g058301/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22176.2.S1_at--58--8951Chr01:9892350..9892370 (21 bp)
TGACGTGGTCTCCATTGTAGACATT
LOC_Os01g17214
OsAffx.22176.2.S1_at--15--5691Chr01:9892331..9892355 (25 bp)
GACATTGTGGTTTTTGTGTGGCCTT
LOC_Os01g17214
OsAffx.22176.2.S1_at--1001--7473Chr10:10143647..10143671 (25 bp)
GTGTGGCCTTATCCTATGTGGCAAC
NONE
OsAffx.22176.2.S1_at--554--10111Chr01:9892302..9892326 (25 bp)
TATGTGGCAACCTGAGACCACAGTT
LOC_Os01g17214
OsAffx.22176.2.S1_at--976--5853Chr07:6663628..6663652 (25 bp)
GACCACAGTTGCTTGTGGCTACCAT
NONE
OsAffx.22176.2.S1_at--729--7534Chr02:700585..700608 (24 bp)
GTGGCTACCATTGTACATGCCCTAA
NONE
OsAffx.22176.2.S1_at--190--7031Chr01:9892261..9892285 (25 bp)
GTACATGCCCTAAGGTGTCTGCATC
LOC_Os01g17214
OsAffx.22176.2.S1_at--1046--9771Chr01:9892251..9892275 (25 bp)
TAAGGTGTCTGCATCCAGCATCCTA
LOC_Os01g17214
OsAffx.22176.2.S1_at--1048--4971Chr01:9892241..9892265 (25 bp)
GCATCCAGCATCCTATGTGATCTTA
LOC_Os01g17214
OsAffx.22176.2.S1_at--488--9251Chr01:9892231..9892255 (25 bp)
TCCTATGTGATCTTATTTCTTTCTC
LOC_Os01g17214
OsAffx.22176.2.S1_at--806--191Chr01:9892217..9892241 (25 bp)
ATTTCTTTCTCATTATGCTCTCATG
LOC_Os01g17214
Target Sequence 
TGACGTGGTCTCCATTGTAGACATTGTGGTTTTTGTGTGGCCTTATCCTATGTGGCAACCTGAGACCACAGTTGCTTGTG
GCTACCATTGTACATGCCCTAAGGTGTCTGCATCCAGCATCCTATGTGATCTTATTTCTTTCTCATTATGCTCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22176.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis