Browse Element(s) Details


OsAffx.22238.2.S1_at

Description tigr:9635.m02172
TID=OsAffx.22238.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g229209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22850OsAffx.28544.2.S1_x_at11/117+12883052..12884397Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g22860OsAffx.25936.1.S1_s_at11/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.7.S1_s_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.1.S1_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.2.S1_x_at4/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.5.S1_x_at3/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22238.2.S1_at--165--3831Chr07:12910122..12910146 (25 bp)
CTGCTTAGATTTGCGGTGTACCCAG
LOC_Os07g22920
OsAffx.22238.2.S1_at--1128--1251Chr07:12910116..12910140 (25 bp)
AGATTTGCGGTGTACCCAGAGCGAT
LOC_Os07g22920
OsAffx.22238.2.S1_at--1155--9131Chr07:12910111..12910135 (25 bp)
TGCGGTGTACCCAGAGCGATGCCAA
LOC_Os07g22920
OsAffx.22238.2.S1_at--610--1371Chr07:12910099..12910123 (25 bp)
AGAGCGATGCCAACCACTTCCAATG
LOC_Os07g22920
OsAffx.22238.2.S1_at--283--3251Chr07:12910091..12910113 (23 bp)
CAACCACTTCCAATGTTCACGAATG
LOC_Os07g22920
OsAffx.22238.2.S1_at--260--2051NONE
ACTTCCAATGTTCACGAATGACACA
NONE
OsAffx.22238.2.S1_at--343--8791NONE
TGTTCACGAATGACACAACAATATC
NONE
OsAffx.22238.2.S1_at--1062--171Chr07:12908688..12908712 (25 bp)
ATTTTTCATCAATCCCTCCATCAGT
LOC_Os07g22920
OsAffx.22238.2.S1_at--472--3031Chr07:12908589..12908702 (25 bp)
AATCCCTCCATCAGTCCAGGATGAT
LOC_Os07g22920
OsAffx.22238.2.S1_at--877--1711Chr07:12908425..12908449 (25 bp)
ACCAGACTGTGGTAGAAATTGCACC
LOC_Os07g22920
OsAffx.22238.2.S1_at--170--8591Chr07:12908416..12908440 (25 bp)
TGGTAGAAATTGCACCAGCTGCCCC
LOC_Os07g22920
Target Sequence 
CTGCTTAGATTTGCGGTGTACCCAGAGCGATGCCAACCACTTCCAATGTTCACGAATGACACAACAATATCGTACGCTTA
TGAAGATTTTGAATGGCCAGAAGATCTGAGGATAGATGACTTGAACAATGAGTTCTACCTAGAGCATAAAAAGAATTTCA
TATCTGCCATCTCACCCTTCATCCTTCCCACTGGTGTATCACAATGCCGATTTACTCAGAACTCATATGAGTTCTATCAC
CCAATGTCCACCCCTAGGATCAACCATTTTTCATCAATCCCTCCATCAGTCCAGGATGATGGTCAGCCTCCATCAAACAT
AAGCAAAAGTGGTCAGTCCATTGCATATGCCGATGCTACAACTCTTGTGGAAAATGAATTAACTCTAGCCCCATCAATTA
TCGGCCAAAATGCTCCATCGGCTGAATCCCTGCTCCAAGACCAGACTGTGGTAGAAATTGCACCAGCTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22238.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis