Browse Element(s) Details


OsAffx.2235.1.S1_at

Description tigr:9629.m04289
TID=OsAffx.2235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AMP-binding enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4495011/11AMP-binding enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed
LOC_Os01g44940OsAffx.11469.1.S1_at10/111+25822085..25823172hypothetical protein
LOC_Os01g44950OsAffx.2235.1.S1_at11/111+25825947..25827815AMP-binding enzyme family protein
LOC_Os01g44960Os.7269.1.S1_s_at11/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44960Os.11119.1.S1_a_at1/111+25828749..25831240hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2235.1.S1_at--1126--1631Chr01:25826429..25826453 (25 bp)
AGCGACCTCGGCGTAGTCCATGGAA
LOC_Os01g44950
OsAffx.2235.1.S1_at--305--7271Chr01:25826414..25826438 (25 bp)
GTCCATGGAACGGAGCGGTATCTCT
LOC_Os01g44950
OsAffx.2235.1.S1_at--1129--9451Chr01:25826383..25826407 (25 bp)
TCGGCCGGACAACAGATGCCATTGT
LOC_Os01g44950
OsAffx.2235.1.S1_at--718--4431Chr01:25826366..25826390 (25 bp)
GCCATTGTTGTAGCCGACAGCCAGC
LOC_Os01g44950
OsAffx.2235.1.S1_at--986--1311Chr01:25826282..25826306 (25 bp)
AGAGGCGGCTGCATAGCCTCGTTTA
LOC_Os01g44950
OsAffx.2235.1.S1_at--141--871Chr01:25826186..25826210 (25 bp)
ATGGCTGGCATCTGCCACGGCATAA
LOC_Os01g44950
OsAffx.2235.1.S1_at--1050--9811Chr01:25826134..25826158 (25 bp)
TAACAGTTGCGCGTGTCGTGCTAGC
LOC_Os01g44950
OsAffx.2235.1.S1_at--518--8151Chr01:25826036..25826060 (25 bp)
GGCAAGCTCCCTAAGGTTTTCGAGG
LOC_Os01g44950
OsAffx.2235.1.S1_at--461--6811Chr01:25826021..25826045 (25 bp)
GTTTTCGAGGCACGATATGCCGGAT
LOC_Os01g44950
OsAffx.2235.1.S1_at--189--251Chr01:25826007..25826031 (25 bp)
ATATGCCGGATTGGAGCCCGCTGCT
LOC_Os01g44950
OsAffx.2235.1.S1_at--1016--4111Chr01:25825989..25826013 (25 bp)
CGCTGCTGGCGTTCTTATGGTCAAG
LOC_Os01g44950
Target Sequence 
AGCGACCTCGGCGTAGTCCATGGAACGGAGCGGTATCTCTACGTTCTCGGCCGGACAACAGATGCCATTGTTGTAGCCGA
CAGCCAGCGCCGCGTGCCCGCGCACTACATCGAGACGGCCGCCTTCGAAAGCTCGCCGGGCCGCCTGAGAGGCGGCTGCA
TAGCCTCGTTTACCACGCTACCTGTGTCACCTTCGCCGGTGGTGGTCGTGGCGGAGCTGCAAAACGGGGGAGGCGGTGGG
GATATGGCTGGCATCTGCCACGGCATAAGGCAAGCCGTGTGGAGAGAAGTAGGCGTAACAGTTGCGCGTGTCGTGCTAGC
GGAGAGCGGCGGGGTGCCAAAGACTACGTCGGGGAAGCTGCAACGTGGGGCGGCGAGGGCGAAGCTGCTCGCCGGCAAGC
TCCCTAAGGTTTTCGAGGCACGATATGCCGGATTGGAGCCCGCTGCTGGCGTTCTTATGGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis