Browse Element(s) Details


OsAffx.22446.1.S1_x_at

Description gb:NM_186606.1
DB_XREF= gi:34900297
GEN=B1130E10.11
TID=OsAffx.22446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1130E10.11 (B1130E10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g130304/11Auxin-responsive protein IAA8, putative, expressed
LOC_Os12g298004/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22446.1.S1_x_at--393--2753Chr01:7248019..7248043 (25 bp)
AAGAACTACAAGGACATGTCTTTGG
LOC_Os01g13030
OsAffx.22446.1.S1_x_at--833--2113Chr01:7248032..7248056 (25 bp)
ACATGTCTTTGGGTCTCGAGAAAAT
LOC_Os01g13030
OsAffx.22446.1.S1_x_at--550--10253Chr01:7248039..7248063 (25 bp)
TTTGGGTCTCGAGAAAATGTTCATT
LOC_Os01g13030
OsAffx.22446.1.S1_x_at--744--2993Chr01:7248054..7248077 (24 bp)
AATGTTCATTGGCTTCAGCACCGGG
LOC_Os01g13030
OsAffx.22446.1.S1_x_at--600--1611Chr07:6687744..6687768 (25 bp)
AGCTGAGCCTCCTTGCGGCAGAGAC
NONE
OsAffx.22446.1.S1_x_at--112--3431Chr07:6687726..6687750 (25 bp)
CAGAGACCGAGTATGACGCGCGCGT
NONE
OsAffx.22446.1.S1_x_at--425--1391Chr07:6687723..6687747 (25 bp)
AGACCGAGTATGACGCGCGCGTCGA
NONE
OsAffx.22446.1.S1_x_at--28--7094Chr12:24689153..24689174 (22 bp)
GTCAAGCTCACGAGCTGGGCCTCAG
NONE
OsAffx.22446.1.S1_x_at--258--3754Chr12:24689170..24689194 (25 bp)
CTCAGCGCCGGACTTGTGCAAGAAG
NONE
OsAffx.22446.1.S1_x_at--255--7552Chr12:24689260..24689279 (20 bp)
GTGGCCGGACTCATCGTCTTGGAAC
NONE
OsAffx.22446.1.S1_x_at--54--3954Chr12:24689260..24689284 (25 bp)
CGGACTCATCGTCTTGGAACGACAC
NONE
Target Sequence 
AAGAACTACAAGGACATGTCTTTGGGTCTCGAGAAAATGTTCATTGGCTTCAGCACCGGGGAGGCCGACGAGGAACCCCA
CGTGCCGACGGAGGCCGAGGACGAGAGGCGCGCCGGCGGCTGCGAGCTGAGCCTCCTTGCGGCAGAGACCGAGTATGACG
CGCGCGTCGATGGACGCCGGCCCGTCAAGCTCACGAGCTGGGCCTCAGCGCCGGACTTGTGCAAGAAGATGGCGAAGGTC
GGGGAGCAGCAGCCGGCGCTGGACTTGCGCGAGAAGATGGCGAGCGCGGTGGCCGGACTCATCGTCTTGGAACGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22446.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis