Browse Element(s) Details


OsAffx.22485.1.S1_x_at

Description tigr:9635.m03740
TID=OsAffx.22485.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3766011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22485.1.S1_x_at--447--4511Chr07:22578472..22578496 (25 bp)
GCCGAGAGCCCCAAGGTGTCGACGC
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--697--4531Chr07:22578479..22578503 (25 bp)
GCCCCAAGGTGTCGACGCCCAAGGA
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--319--9371Chr07:22578490..22578512 (23 bp)
TCGACGCCCAAGGAGTGGCTGGTAC
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--902--8011Chr07:22578501..22578572 (25 bp)
GGAGTGGCTGGTACGGCATCGGGCA
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--869--8331Chr07:22578557..22578577 (21 bp)
GGCTGGTACGGCATCGGGCAGGCGG
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--536--3431Chr07:22578578..22578602 (25 bp)
CAGAGGAAGGAATTGCGCGGGCGGC
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--354--6491Chr07:22578663..22578687 (25 bp)
GATAGCGCGGCGAGCTGTTGCCTAT
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--581--1611Chr07:22578675..22578699 (25 bp)
AGCTGTTGCCTATGGTGAGGACGCC
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--972--10631Chr07:22578680..22578704 (25 bp)
TTGCCTATGGTGAGGACGCCGTTGA
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--460--7711Chr07:22578712..22578736 (25 bp)
GGGTGGCACGGAGGACAGCGGAGAC
LOC_Os07g37660
OsAffx.22485.1.S1_x_at--314--7711Chr07:22578738..22578762 (25 bp)
GGGTGCAAAGGACGGCGAGCAGGTT
LOC_Os07g37660
Target Sequence 
GCCGAGAGCCCCAAGGTGTCGACGCCCAAGGAGTGGCTGGTACGGCATCGGGCAGGCGGCAGAGGAAGGAATTGCGCGGG
CGGCGGGCGGCGGGCGGCAGGGGAGGAGCGGCATGCGGGCGGCAGGGGAGCAATTGGGCAAGGGGATAGCGCGGCGAGCT
GTTGCCTATGGTGAGGACGCCGTTGAGGTCGGAGGGTGGCACGGAGGACAGCGGAGACGGGGTGCAAAGGACGGCGAGCA
GGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22485.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis