Browse Element(s) Details


OsAffx.22575.1.S1_at

Description gb:NM_185651.1
DB_XREF= gi:34898387
TID=OsAffx.22575.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g070604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22575.1.S1_at--954--9831Chr06:3354427..3354446 (20 bp)
TACACGTTTGCGGAGGGTTTTTGCA
NONE
OsAffx.22575.1.S1_at--885--2311Chr06:3354447..3354471 (25 bp)
AAAGTGTCAATCTGAAGTCGACATC
NONE
OsAffx.22575.1.S1_at--600--1151Chr06:3354462..3354486 (25 bp)
AGTCGACATCTTCTATTCTTCGGGA
NONE
OsAffx.22575.1.S1_at--643--431Chr06:3354469..3354493 (25 bp)
ATCTTCTATTCTTCGGGACTCCTCT
NONE
OsAffx.22575.1.S1_at--914--1551Chr06:3354519..3354543 (25 bp)
AGCTTCTCCCGCCATTCGGCTGTTG
NONE
OsAffx.22575.1.S1_at--402--8811Chr06:3354539..3354563 (25 bp)
TGTTGCCCGCAGACCAAACGTAGTG
NONE
OsAffx.22575.1.S1_at--1044--2371Chr06:3354554..3354583 (25 bp)
AAACGTAGTGCGCTCCGCCTTGCAT
NONE
OsAffx.22575.1.S1_at--508--9671Chr06:3354781..3354805 (25 bp)
TCACCGAACCCCTATGACAACAAGT
LOC_Os06g07060
OsAffx.22575.1.S1_at--403--9091Chr06:3354842..3354866 (25 bp)
TGCTCGACGAAATAGGCCTCCGCCA
LOC_Os06g07060
OsAffx.22575.1.S1_at--858--9451Chr06:3354950..3354974 (25 bp)
TACGGCCGCGGATGGCGTTTCGCCC
LOC_Os06g07060
OsAffx.22575.1.S1_at--950--6831Chr06:3354966..3354990 (25 bp)
GTTTCGCCCGACTTGGCGTGCACGA
LOC_Os06g07060
Target Sequence 
TACACGTTTGCGGAGGGTTTTTGCAAAAGTGTCAATCTGAAGTCGACATCTTCTATTCTTCGGGACTCCTCTCGCTTCGC
CGCCAGCGCTGCTCCTCAGCTTCTCCCGCCATTCGGCTGTTGCCCGCAGACCAAACGTAGTGCGCTCCGCCTTGCATCCT
GCAAGGCTGCAACCAGCCACCGCTCTCCGATGTCGCCGCCGCCGCATCCTCCTTCCGCACCACCCATCCGCTCCCCCTTC
CATCGCCTCCTCCTCCGGCCCCCGCCAAGACCACCGGTTCCTCCTATTCGTCGACCTCGCCAAGGAGCTGTCCTTCCGGC
CTACGTCGCCTACTCTGACACAGCCGCACTGCGGTCACCGAACCCCTATGACAACAAGTCGGGGAACGGCGCGAGCGCGG
ACTGCGCCTTCCACCTGCTCGACGAAATAGGCCTCCGCCAGCGCCGCACGCCTGCTTCATCACGGGCACCGCGGCGCTCT
CTTACGCTTCTCGCCCGGGCGCACTGCTCGCCGTGCTGGACGCTACGGCCGCGGATGGCGTTTCGCCCGACTTGGCGTGC
ACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis