Browse Element(s) Details

OsAffx.22609.1.S1_x_at

Description

tigr:9634.m00091
TID=OsAffx.22609.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01920	11/11	Alpha-expansin 7 precursor, putative, expressed
LOC_Os10g39110	1/11	Alpha-expansin 7 precursor, putative
LOC_Os10g38690	1/11	glutathione S-transferase GSTU6, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01870	NA	NA	6	+	488917..489695	hypothetical protein
LOC_Os06g01879	NA	NA	6	+	497435..498193	hypothetical protein
LOC_Os06g01890	NA	NA	6	+	501599..503591	retrotransposon protein, putative, unclassified
LOC_Os06g01899	NA	NA	6	+	504442..505200	hypothetical protein
LOC_Os06g01910	OsAffx.22610.1.S1_at	11/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01910	Os.50533.1.S1_at	1/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01920	OsAffx.22609.1.S1_x_at	11/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01920	OsAffx.18574.1.S1_x_at	1/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_x_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.1.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.53217.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.43567.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.38172.1.S1_x_at	3/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950	OsAffx.22608.1.S1_at	11/11	6	+	529833..531434	phosphoglycerate mutase family protein, expressed
LOC_Os06g01960	OsAffx.22608.3.S1_x_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	OsAffx.22608.3.S1_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	Os.4403.1.A1_x_at	4/11	6	+	532475..534605	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0009826	biological_process	unidimensional cell growth
GO:0009828	biological_process	cell wall loosening (sensu Magnoliophyta)
GO:0009831	biological_process	cell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22609.1.S1_x_at--583--187	1	Chr06:511367..511391 (25 bp)	ACGAGCTGCGGTGCGTCAAGTCGCC	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--136--971	1	Chr06:511352..511376 (25 bp)	TCAAGTCGCCGTGGTGCAACCCGGG	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--266--925	1	Chr06:511212..511236 (25 bp)	TCCTTCCTCAAGCTCGCGCAGAGGG	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--170--819	1	Chr06:511112..511136 (25 bp)	GGAACCACTACTGGTTGCTGCTCTA	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--984--195	1	Chr06:511103..511127 (25 bp)	ACTGGTTGCTGCTCTACGTCATGAA	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--696--911	2	Chr10:20517565..20517590 (23 bp)	TGCTGCTCTACGTCATGAACGTCGG	LOC_Os10g39110
OsAffx.22609.1.S1_x_at--226--373	1	Chr06:511090..511114 (25 bp)	CTACGTCATGAACGTCGGCGGCGCC	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--851--949	1	Chr06:511049..511073 (25 bp)	TCTCCGTCAAGACCTCCGGTGGCGG	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--78--391	1	Chr06:511018..511042 (25 bp)	CTGGATCCAGGCGGCGCACAACTGG	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--11--257	1	Chr06:510999..511023 (25 bp)	AACTGGGGCATCACGTACCAGGTGT	LOC_Os06g01920
OsAffx.22609.1.S1_x_at--473--403	2	Chr10:20287604..20287623 (20 bp)	CGTACCAGGTGTTCGCCGCGCTGGA	LOC_Os10g38690

Target Sequence

ACGAGCTGCGGTGCGTCAAGTCGCCGTGGTGCAACCCGGGGTCGCCGTCGGTGGTCATCACGGGGACCAACCTGTGCCCG
CCCAACTGGTACCTCCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGGCACCACTTCGACATGGCGCCGCCCTCCTT
CCTCAAGCTCGCGCAGAGGGTCGCCGGGATCGTGCCGGTGCAGTACCGCCGCGTGCCGTGCCAGAGGACCGGCGGCGTCA
GGTTCTGCCTCCAGGGGAACCACTACTGGTTGCTGCTCTACGTCATGAACGTCGGCGGCGCCGGCGACGTCTCCTCCCTC
TCCGTCAAGACCTCCGGTGGCGGCGGCGCCTGGATCCAGGCGGCGCACAACTGGGGCATCACGTACCAGGTGTTCGCCGC
GCTGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis