Browse Element(s) Details


OsAffx.22651.1.S1_x_at

Description gb:NM_185081.1
DB_XREF= gi:34897247
TID=OsAffx.22651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0027B08.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g062106/11hypothetical protein
LOC_Os12g376205/11hypothetical protein
LOC_Os04g462703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22651.1.S1_x_at--375--9953Chr12:23066685..23066709 (25 bp)
TACGCGGCGAGGCTTCAAAGCTTCC
LOC_Os12g37620
OsAffx.22651.1.S1_x_at--390--4612Chr04:27201845..27201869 (25 bp)
GCGACGCTGTCGGAGGCGCTCTACA
LOC_Os04g46270
OsAffx.22651.1.S1_x_at--791--893Chr03:3093737..3093761 (25 bp)
AGGCGCTCTACATCGTCAGCATGGG
LOC_Os03g06210
OsAffx.22651.1.S1_x_at--982--9871Chr03:34866991..34867015 (25 bp)
TACATCGTCAGCATGGGCACCAAAG
NONE
OsAffx.22651.1.S1_x_at--991--2551Chr03:34866969..34866993 (25 bp)
AAGACTTCCTCGAGAACTACTACGC
NONE
OsAffx.22651.1.S1_x_at--353--9353Chr12:23066785..23066808 (24 bp)
TCGAGAACTACTACGCCATGGCGCG
LOC_Os12g37620
OsAffx.22651.1.S1_x_at--552--872Chr03:3093793..3093817 (25 bp)
ATGGCGCGCGCCCAAGCGGCGGAGT
LOC_Os03g06210
OsAffx.22651.1.S1_x_at--412--2674Chr12:23066815..23066839 (25 bp)
AAGCGGCGGAGTACTCCACGGCGGT
LOC_Os12g37620
OsAffx.22651.1.S1_x_at--371--3932Chr12:23066833..23066857 (25 bp)
CGGCGGTGGCGTACGGCGACTACCT
LOC_Os12g37620
OsAffx.22651.1.S1_x_at--651--8253Chr12:23066862..23066885 (24 bp)
GGCATCGGCGCATCGCCGAGTCGTC
LOC_Os12g37620
OsAffx.22651.1.S1_x_at--1065--4471Chr03:34866028..34866291 (25 bp)
GCCGGCGTGATAGAATTGACACGTA
NONE
Target Sequence 
TACGCGGCGAGGCTTCAAAGCTTCCGGGGGGACGACGACGCGGCGGCGGCGGCGACGCTGTCGGAGGCGCTCTACATCGT
CAGCATGGGCACCAAAGACTTCCTCGAGAACTACTACGCCATGGCGCGCGCCCAAGCGGCGGAGTACTCCACGGCGGTGG
CGTACGGCGACTACCTCCTCGGCATCGGCGCATCGCCGAGTCGTCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAACGTA
GGCAACAACACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGCGAC
CGTTCCTGAGGAGGGCGCGGGGGCGGAAGGCGGTGCTGGAGAACGGCCACCGGAGGCCGAGGCAAGGGGGAAGCGGCGGC
GGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGCGACAAGGAGAGGGCAGCGGCAGCCGGCGTGATAGAA
TTGACACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22651.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis