Browse Element(s) Details


OsAffx.22651.3.A1_at

Description tigr:9631.m00544
TID=OsAffx.22651.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0621010/11hypothetical protein
LOC_Os12g376204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22651.3.A1_at--584--8393Chr12:23066990..23067014 (25 bp)
GGCGCGTGTACCGACGAGAAAAACA
LOC_Os12g37620
OsAffx.22651.3.A1_at--825--4553Chr12:23066991..23067015 (25 bp)
GCGCGTGTACCGACGAGAAAAACAC
LOC_Os12g37620
OsAffx.22651.3.A1_at--871--4633Chr12:23066993..23067017 (25 bp)
GCGTGTACCGACGAGAAAAACACCG
LOC_Os12g37620
OsAffx.22651.3.A1_at--746--5973Chr12:23067005..23067029 (25 bp)
GAGAAAAACACCGTCGTCGAGCGCT
LOC_Os12g37620
OsAffx.22651.3.A1_at--121--9511Chr03:3094528..3094733 (25 bp)
TCTCCGCCGTGATAGAATTGCCACA
LOC_Os03g06210
OsAffx.22651.3.A1_at--233--3812Chr08:18562884..18563211 (25 bp)
CTCCGCCGTGATAGAATTGCCACAT
NONE
OsAffx.22651.3.A1_at--133--9312Chr08:18562885..18563212 (25 bp)
TCCGCCGTGATAGAATTGCCACATA
NONE
OsAffx.22651.3.A1_at--841--4212Chr08:18562886..18563213 (25 bp)
CCGCCGTGATAGAATTGCCACATAA
NONE
OsAffx.22651.3.A1_at--297--4173Chr08:18562887..18563214 (25 bp)
CGCCGTGATAGAATTGCCACATAAG
NONE
OsAffx.22651.3.A1_at--995--4493Chr08:18563196..18563215 (20 bp)
GCCGTGATAGAATTGCCACATAAGC
NONE
OsAffx.22651.3.A1_at--559--4251Chr01:25305292..25305312 (21 bp)
CCGTGATAGAATTGCCACATAAGCG
NONE
Target Sequence 
GGCGCGTGTACCGACGAGAAAAACACCGTCGTCGAGCGCTTCAACGTCGGCCTCCAGGACATGATCGCGAGGCTCAACGA
CGAGCTCGGCGACGGCGAGATGATCGTGTACGGCGACGTGTACAGGCCGGTGGCCGCCGGCGGCGTACGGGGTGGAGAAC
GTAGGCAACAGCACCGTGCCCACGCGGGTCAACCGGCGGCGGCTCACCTGTGCCATCTGCTTCGACATGTTCGCCCCCGT
CGCCGGCGGAGGCGAGCGCGGCGACCGTTCCTGAGGAGGGCGCGGGGGCGGAAGACGGTGCTGGAGAACGGCCACCGGAG
GCCGAGGCAAGGGGGAAGCGGCGGCGGCGGCGGGAACATGCGGAGGCGGCGGAGGCAGGCACGGCAGGTGACGAGGAGAG
GGCAGCGGCAGCCGGCGGTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCGCGCCTCGACGCTGTCCGCATCTCCGCCGTG
ATAGAATTGCCACATAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22651.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis