Browse Element(s) Details


OsAffx.22670.1.S1_s_at

Description tigr:9631.m05485
TID=OsAffx.22670.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4101411/11Glycosyl hydrolases family 17 protein
LOC_Os03g5613011/11Glycosyl hydrolases family 17 protein
LOC_Os01g714748/11Lichenase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22670.1.S1_s_at--109--9432Chr03:31919364..31919388 (25 bp)
TCGTGGGCAATGAGGTCGCCGGCGC
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--148--7614Chr03:31919452..31919476 (25 bp)
GGGACACATCAAGGTGACGACGTCG
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--244--373Chr03:31919459..31919483 (25 bp)
ATCAAGGTGACGACGTCGATCTCCC
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--873--2893Chr03:31919462..31919486 (25 bp)
AAGGTGACGACGTCGATCTCCCAGG
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--450--7373Chr03:31919465..31919489 (25 bp)
GTGACGACGTCGATCTCCCAGGCCA
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--28--9112Chr03:31919595..31919619 (25 bp)
TGCTGGCCAACCTGTACCCGTACTT
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--1040--8432Chr03:31919598..31919622 (25 bp)
TGGCCAACCTGTACCCGTACTTCAT
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--90--3953Chr03:31919641..31919665 (25 bp)
CGGCATGGACATCAGCTTCGCGCTG
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--1--853Chr03:31919645..31919669 (25 bp)
ATGGACATCAGCTTCGCGCTGTTCA
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--1125--393Chr03:31919651..31919675 (25 bp)
ATCAGCTTCGCGCTGTTCACGGCGA
LOC_Os03g56130
OsAffx.22670.1.S1_s_at--362--10654Chr03:31919657..31919681 (25 bp)
TTCGCGCTGTTCACGGCGAGCGAGC
LOC_Os03g56130
Target Sequence 
TCGTGGGCAATGAGGTCGCCGGCGCCGACACGCAGCTCCTCGTCCCGGCCATGGAGAACGTCCACGCCGCGCTCGCGGTG
GCTGGTCTGGGACACATCAAGGTGACGACGTCGATCTCCCAGGCCACCATCGGAATCCACATCCCGCCATCCGCCAGCGA
GTTCACCGACGAGGCGAAGTCGTCGTTCCTGAGCTACGTGATCCCATTCCTGGAATGGACGCACGCGCCGCTGCTGGCCA
ACCTGTACCCGTACTTCATCTACTCCTACAACCCGGGCGGCATGGACATCAGCTTCGCGCTGTTCACGGCGAGCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22670.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis