Browse Element(s) Details


OsAffx.22917.1.S1_x_at

Description gb:NM_183651.1
DB_XREF= gi:34894429
GEN=OSJNBa0025P13.10
TID=OsAffx.22917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0025P13.10 (OSJNBa0025P13.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g141903/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os01g14160Os.29992.2.S1_x_at11/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_x_at2/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_at1/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14170OsAffx.31422.1.S1_at1/111+7937178..7940562hypothetical protein
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22917.1.S1_x_at--867--5171Chr01:10865058..10865079 (22 bp)
GCAAGGAAGCGGTACCTGCTATCCT
NONE
OsAffx.22917.1.S1_x_at--48--951Chr01:10865055..10865079 (25 bp)
AGGAAGCGGTACCTGCTATCCTTCC
NONE
OsAffx.22917.1.S1_x_at--294--2211Chr01:10865029..10865053 (25 bp)
ACAAGCGCCTCCTCATTAGAAACAC
NONE
OsAffx.22917.1.S1_x_at--1094--4551Chr01:10865025..10865049 (25 bp)
GCGCCTCCTCATTAGAAACACCGGT
NONE
OsAffx.22917.1.S1_x_at--102--10031Chr01:10865013..10865037 (25 bp)
TAGAAACACCGGTGCCTTGATCTTC
NONE
OsAffx.22917.1.S1_x_at--911--8811Chr01:10864996..10865020 (25 bp)
TGATCTTCCCCATCCCGACAAGGAT
NONE
OsAffx.22917.1.S1_x_at--970--9291NONE
TCCCGACAAGGATAAGCTGCCAGAT
NONE
OsAffx.22917.1.S1_x_at--815--3211NONE
CAAGGATAAGCTGCCAGATGGGCGA
NONE
OsAffx.22917.1.S1_x_at--1046--7534Chr02:15221841..15221865 (25 bp)
GTGGCGGCGGCTGTCTTAGATCTCC
NONE
OsAffx.22917.1.S1_x_at--50--4714Chr02:15221847..15221871 (25 bp)
GCGGCTGTCTTAGATCTCCTTGGCT
NONE
OsAffx.22917.1.S1_x_at--1031--1275Chr02:15221858..15221882 (25 bp)
AGATCTCCTTGGCTCCTTGCTGGAG
NONE
Target Sequence 
GCAAGGAAGCGGTACCTGCTATCCTTCCCACAAGCGCCTCCTCATTAGAAACACCGGTGCCTTGATCTTCCCCATCCCGA
CAAGGATAAGCTGCCAGATGGGCGACGGCGGCGGCGGCGGCGGTGGTGACGACGGCAGCGGCAAGCCGGCGACAGTGGCG
GCGGCTGTCTTAGATCTCCTTGGCTCCTTGCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22917.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis