Browse Element(s) Details


OsAffx.22944.2.S1_s_at

Description gb:NM_183494.1
DB_XREF= gi:34894115
GEN=P0005A05.23
TID=OsAffx.22944.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0005A05.23 (P0005A05.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3977011/11hypothetical protein
LOC_Os01g0176011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39720OsAffx.32100.2.S1_s_at11/1112+24497951..24500166expressed protein
LOC_Os12g39730OsAffx.32101.2.S1_at11/1112+24501302..24505155hypothetical protein
LOC_Os12g39730OsAffx.32101.3.S1_x_at6/1112+24501302..24505155hypothetical protein
LOC_Os12g39740OsAffx.25936.7.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_at7/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.2.S1_x_at4/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.5.S1_x_at1/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39750NANA12+24514183..24514455hypothetical protein
LOC_Os12g39760Os.10827.1.S1_x_at11/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39760Os.46055.2.S1_x_at5/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39770OsAffx.22944.2.S1_s_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39770OsAffx.22944.4.S1_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39780OsAffx.32100.2.S1_s_at11/1112+24526079..24527905expressed protein
LOC_Os12g39790OsAffx.20038.1.S1_at10/1112+24535667..24539893hypothetical protein
LOC_Os12g39800Os.52959.1.S1_at11/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.19542.3.S1_x_at10/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800Os.51841.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.9949.1.S1_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.21754.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22944.2.S1_s_at--528--3893Chr12:24524840..24524864 (25 bp)
CTGTGCCCTGAACCATCTCTGATGG
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--673--4533Chr12:24524844..24524868 (25 bp)
GCCCTGAACCATCTCTGATGGCGAT
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--55--2653Chr12:24524850..24524874 (25 bp)
AACCATCTCTGATGGCGATGACGAC
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--754--4112Chr12:24525154..24525178 (25 bp)
CGAAGATGGTGCCTCCGTTTACGGT
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--1043--3793Chr12:24525166..24525190 (25 bp)
CTCCGTTTACGGTGCTGCAGGTCAA
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--1106--4013Chr12:24525169..24525193 (25 bp)
CGTTTACGGTGCTGCAGGTCAAGGA
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--1048--7074Chr12:24525186..24525210 (25 bp)
GTCAAGGAGAGGAGCCCGCGGAGGC
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--394--1533Chr12:24525224..24525248 (25 bp)
AGCATGGACGCCACAAGGCTGTCGT
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--757--1813Chr12:24525231..24525255 (25 bp)
ACGCCACAAGGCTGTCGTCGAATGC
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--493--8333Chr12:24525240..24525264 (25 bp)
GGCTGTCGTCGAATGCCGCCGGCAA
LOC_Os12g39770
OsAffx.22944.2.S1_s_at--976--7753Chr12:24525352..24525376 (25 bp)
GGTGCAAGTCAAGGAGGAACCAGTC
LOC_Os12g39770
Target Sequence 
CTGTGCCCTGAACCATCTCTGATGGCGATGACGACGGCCGGCGCAGTCCTCCATCCACGCCCGCTTCAGCTAGCTGCAGG
CCCTCCAGGCTTCCCGCCCCGCGGCCCCCGCCGCCGCCGGGAGCCATGGCGAGGACGTCCAGGAACAGGGAGAGGACGAA
GTGATGGCAGCGGCGGCGGCGAAGATGGTGCCTCCGTTTACGGTGCTGCAGGTCAAGGAGAGGAGCCCGCGGAGGCGCCG
GCATGCGCGAGCATGGACGCCACAAGGCTGTCGTCGAATGCCGCCGGCAAGCGTGCCGGCGTCGGGCAAGATGGGTTCGT
TCGACCCGGTGGGATGGCGGTGCCGGCGGCGGCGGCGAAGATGGCGCCTCCGTCAAAGGTGCAAGTCAAGGAGGAACCAG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22944.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis