Browse Element(s) Details


OsAffx.23070.1.S1_at

Description tigr:9629.m00228
TID=OsAffx.23070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03160Os.6520.1.S1_at11/111+1229295..1233583Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_x_at11/111+1235425..1239153Seven in absentia protein family protein, expressed
LOC_Os01g03170OsAffx.10889.1.S1_at11/111+1235425..1239153Seven in absentia protein family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23070.1.S1_at--656--4031Chr01:1214699..1214723 (25 bp)
CGTTCGCCTGGCTGGACCGGCGCTC
LOC_Os01g03130
OsAffx.23070.1.S1_at--978--8531Chr01:1214687..1214711 (25 bp)
TGGACCGGCGCTCCCATACCGGCGA
LOC_Os01g03130
OsAffx.23070.1.S1_at--903--291Chr01:1214672..1214696 (25 bp)
ATACCGGCGACCACCACAGAAGACG
LOC_Os01g03130
OsAffx.23070.1.S1_at--431--9971Chr01:1214671..1214695 (25 bp)
TACCGGCGACCACCACAGAAGACGA
LOC_Os01g03130
OsAffx.23070.1.S1_at--475--7111Chr01:1214642..1214666 (25 bp)
GTCAGTGACATTGAGGAAGCCGGCG
LOC_Os01g03130
OsAffx.23070.1.S1_at--781--5771Chr01:1214596..1214620 (25 bp)
GACGACGCGGATCAGTTCTTCTCGG
LOC_Os01g03130
OsAffx.23070.1.S1_at--1027--1851Chr01:1214595..1214619 (25 bp)
ACGACGCGGATCAGTTCTTCTCGGG
LOC_Os01g03130
OsAffx.23070.1.S1_at--529--4091Chr01:1214594..1214618 (25 bp)
CGACGCGGATCAGTTCTTCTCGGGC
LOC_Os01g03130
OsAffx.23070.1.S1_at--86--5811Chr01:1214593..1214617 (25 bp)
GACGCGGATCAGTTCTTCTCGGGCG
LOC_Os01g03130
OsAffx.23070.1.S1_at--560--1831Chr01:1214592..1214616 (25 bp)
ACGCGGATCAGTTCTTCTCGGGCGG
LOC_Os01g03130
OsAffx.23070.1.S1_at--1117--4671Chr01:1214590..1214614 (25 bp)
GCGGATCAGTTCTTCTCGGGCGGCG
LOC_Os01g03130
Target Sequence 
CGTTCGCCTGGCTGGACCGGCGCTCCCATACCGGCGACCACCACAGAAGACGACGACGTCAGTGACATTGAGGAAGCCGG
CGGCGGTGAGGTCGCGGCGGCGCGACGACGCGGATCAGTTCTTCTCGGGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis