Browse Element(s) Details


OsAffx.2310.1.S1_at

Description tigr:9629.m05063
TID=OsAffx.2310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial ATP synthase g subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5220011/11mitochondrial ATP synthase g subunit family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2310.1.S1_at--460--4571Chr01:30346636..30346660 (25 bp)
GCGCGTTCCACGAGGAGCTCATGGA
LOC_Os01g52200
OsAffx.2310.1.S1_at--1148--4811Chr01:30346620..30346644 (25 bp)
GCTCATGGAGCGGAACAAGCGCTAC
LOC_Os01g52200
OsAffx.2310.1.S1_at--361--4691Chr01:30346611..30346635 (25 bp)
GCGGAACAAGCGCTACGTCATCGAC
LOC_Os01g52200
OsAffx.2310.1.S1_at--987--4931Chr01:30344797..30344821 (25 bp)
GCATCCCTGGCCGTTACGAGTCGTT
LOC_Os01g52200
OsAffx.2310.1.S1_at--849--8391Chr01:30344790..30344814 (25 bp)
TGGCCGTTACGAGTCGTTCTGGAAA
LOC_Os01g52200
OsAffx.2310.1.S1_at--1003--10591Chr01:30344774..30344798 (25 bp)
TTCTGGAAAGAGGTTGATGGCGCAA
LOC_Os01g52200
OsAffx.2310.1.S1_at--592--8471Chr01:30344757..30344781 (25 bp)
TGGCGCAAAGCTCTTGTGGAAAAAC
LOC_Os01g52200
OsAffx.2310.1.S1_at--304--5251Chr01:30344727..30344751 (25 bp)
GAATCTAAATCTAAAGGCCGAGGAT
LOC_Os01g52200
OsAffx.2310.1.S1_at--294--891Chr01:30344713..30344737 (25 bp)
AGGCCGAGGATATTGGCGTTGCAAC
LOC_Os01g52200
OsAffx.2310.1.S1_at--643--10231Chr01:30344703..30344727 (25 bp)
TATTGGCGTTGCAACATTGTTTGGT
LOC_Os01g52200
OsAffx.2310.1.S1_at--1145--6851Chr01:30344680..30344704 (25 bp)
GTATTGAGTTGATAGCATGGTTTGC
LOC_Os01g52200
Target Sequence 
GCGCGTTCCACGAGGAGCTCATGGAGCGGAACAAGCGCTACGTCATCGACCCGCCCACCATCCAGACGTGCCAGGAGCTC
TCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCATCCCTGGCCGTTACGAGTCGTTCTGGAAAGAGGTTGATGGCGCAAA
GCTCTTGTGGAAAAACAGGAAGAATCTAAATCTAAAGGCCGAGGATATTGGCGTTGCAACATTGTTTGGTATTGAGTTGA
TAGCATGGTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis