Browse Element(s) Details


OsAffx.23102.1.S1_at

Description tigr:9629.m00282
TID=OsAffx.23102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0366010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009845biological_processseed germination
GO:0009892biological_processnegative regulation of metabolism
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23102.1.S1_at--615--3571Chr01:1508148..1508172 (25 bp)
CATATGGAATCCTCACCGTATCGCT
LOC_Os01g03660
OsAffx.23102.1.S1_at--1109--6891Chr01:1508165..1508189 (25 bp)
GTATCGCTCTATGCAGTATTCGTAT
LOC_Os01g03660
OsAffx.23102.1.S1_at--1073--151NONE
ATTTTGGTTTTCTCTGCAAGTCTGC
NONE
OsAffx.23102.1.S1_at--102--10051Chr01:1509142..1509166 (25 bp)
TAGTACTATAGAGCATCCACCCTCG
LOC_Os01g03660
OsAffx.23102.1.S1_at--905--9211Chr01:1509157..1509181 (25 bp)
TCCACCCTCGCTACATGATGATGAA
LOC_Os01g03660
OsAffx.23102.1.S1_at--570--7171Chr01:1509201..1509225 (25 bp)
GTCTGCGAAGCGAAGCTCACGACGA
LOC_Os01g03660
OsAffx.23102.1.S1_at--664--8611Chr01:1509229..1509253 (25 bp)
TGGTGCAAAGCATCCGGGCCACAAT
LOC_Os01g03660
OsAffx.23102.1.S1_at--472--6311Chr01:1509284..1509308 (25 bp)
GATGAATGTACAGTCGCCGACGACG
LOC_Os01g03660
OsAffx.23102.1.S1_at--447--5791Chr01:1509305..1509329 (25 bp)
GACGCAAGTAGCTGTAACCACCAAG
LOC_Os01g03660
OsAffx.23102.1.S1_at--105--331Chr01:1509349..1509373 (25 bp)
AGAATTGAACCTAGAGCTTACCCTC
LOC_Os01g03660
OsAffx.23102.1.S1_at--108--4451Chr01:1509379..1509403 (25 bp)
GCCTTGCATCTACTTGTTACTTGGA
LOC_Os01g03660
Target Sequence 
CATATGGAATCCTCACCGTATCGCTCTATGCAGTATTCGTATTTTGGTTTTCTCTGCAAGTCTGCAGGTGTCATCGCAGC
CTCCACCACGGCTCATCTCCGAGCACTTGCCGGCCGGTGATCCGCCGTCGCCGCTTAGCCGGAGCAGAAAGAGGAGGAGC
TTCTCCGAGGAAGAGGACGAGCTCCTCCTCAAGCTGCACGCTTTGCTCGGCAACCGTTGGTCCCTCATCGCTGGGAGGCT
ACCGGGGAGGACAGACAAAGAGGTCATGAACCACTGGAACTCCAAGCTGATGGATAGTACTATAGAGCATCCACCCTCGC
TACATGATGATGAACACCGTCGACGGCGTCGCCGTCTGCGAAGCGAAGCTCACGACGAACGTGGTGCAAAGCATCCGGGC
CACAATTCATCTTCTTCCTCCAAGGACGTCAATGGCGATGAATGTACAGTCGCCGACGACGCAAGTAGCTGTAACCACCA
AGATGATAACCGGGCTGTTGCAGAATTGAACCTAGAGCTTACCCTCTCTACGCCTTGCATCTACTTGTTACTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis