Browse Element(s) Details


OsAffx.23147.1.S1_at

Description gb:NM_184540.1
DB_XREF= gi:34896169
GEN=P0028E10.23
TID=OsAffx.23147.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0028E10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0743011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23147.1.S1_at--708--6391Chr01:3518344..3518368 (25 bp)
GATCGAGAGGCGGAGACCATCCTCT
LOC_Os01g07430
OsAffx.23147.1.S1_at--1129--4271Chr01:3518318..3518342 (25 bp)
CCTGCAGAAACTCCTCGGCAACAGG
LOC_Os01g07430
OsAffx.23147.1.S1_at--350--2531Chr01:3518032..3518056 (25 bp)
AACTACTGGAATTCCCGCATCAGGA
LOC_Os01g07430
OsAffx.23147.1.S1_at--813--3151Chr01:3518023..3518047 (25 bp)
AATTCCCGCATCAGGAAGCGTCAGT
LOC_Os01g07430
OsAffx.23147.1.S1_at--405--1411Chr01:3517950..3517974 (25 bp)
AGAAAGAACCGACGGCCAATGCGGC
LOC_Os01g07430
OsAffx.23147.1.S1_at--232--10591Chr01:3517858..3517882 (25 bp)
TTCTCCTGCCAACTGCTCGACGGAG
LOC_Os01g07430
OsAffx.23147.1.S1_at--85--5451Chr01:3517793..3517817 (25 bp)
GAACGCCGGTTCATCGGATATCAGC
LOC_Os01g07430
OsAffx.23147.1.S1_at--737--9431Chr01:3517780..3517804 (25 bp)
TCGGATATCAGCGAGGTGAGCGCCT
LOC_Os01g07430
OsAffx.23147.1.S1_at--37--5691Chr01:3517648..3517672 (25 bp)
GACTTGCTCGTCGATGTCCCCGGAT
LOC_Os01g07430
OsAffx.23147.1.S1_at--618--771Chr01:3517635..3517659 (25 bp)
ATGTCCCCGGATTGCTCGACGTTGA
LOC_Os01g07430
OsAffx.23147.1.S1_at--1076--10691Chr01:3517624..3517648 (25 bp)
TTGCTCGACGTTGATGCGTGGGATT
LOC_Os01g07430
Target Sequence 
GATCGAGAGGCGGAGACCATCCTCTCCCTGCAGAAACTCCTCGGCAACAGGTGGTCGGTGATCGCGGCGAAGATGCCGGG
CAGGACGGACAACGAGATCAAGAACTACTGGAATTCCCGCATCAGGAAGCGTCAGTCCGCCGCCGCCGGAGCTAAAGGCG
AGCCGGCGCCGGCCACGGTCATGGAGAAAGAACCGACGGCCAATGCGGCCACCGTGGCGGCGGCGCCGGAGGCGGCATCT
CCTCCTCCTCCTCCTATCCCGGCGCGGCTCCCGATGTTCTCCTGCCAACTGCTCGACGGAGGCGGCAGCGGCGGCGCCAC
CGCCACCACACAGTCGCCGCCGAACGCCGGTTCATCGGATATCAGCGAGGTGAGCGCCTGCGGCGGCAACGGCGGCGGCG
AGGACTCCTCCCGTGACTACTGCTTCTCCGGCGGCGACGTCGACGGCGACGGCGACATGGTCCACCTCCTCGCGCTCGAT
GACCTCGACTTGCTCGTCGATGTCCCCGGATTGCTCGACGTTGATGCGTGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis