Browse Element(s) Details


OsAffx.23156.1.S1_at

Description tigr:9629.m00715
TID=OsAffx.23156.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0780011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein
LOC_Os01g07820Os.47463.1.S1_x_at5/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07820Os.14491.2.S1_x_at4/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23156.1.S1_at--970--411Chr01:3738327..3738595 (25 bp)
ATCATGCTCTTCGACGGTGTGTGCA
LOC_Os01g07800
OsAffx.23156.1.S1_at--850--7471Chr01:3738394..3738418 (25 bp)
GTGTGTGCAACCTCTGCAACGGCGG
LOC_Os01g07800
OsAffx.23156.1.S1_at--244--8071Chr01:3738249..3738378 (25 bp)
GGAGCATGACCCCAACAGAAGCATC
LOC_Os01g07800
OsAffx.23156.1.S1_at--402--5391Chr01:3738232..3738256 (25 bp)
GAAGCATCAGGTATATCCCGTTGCA
LOC_Os01g07800
OsAffx.23156.1.S1_at--799--10171Chr01:3738221..3738245 (25 bp)
TATATCCCGTTGCAGAGCGAATCCG
LOC_Os01g07800
OsAffx.23156.1.S1_at--70--5231Chr01:3738203..3738227 (25 bp)
GAATCCGGGAGGAAGCTCCTTCAGA
LOC_Os01g07800
OsAffx.23156.1.S1_at--843--8051Chr01:3738172..3738196 (25 bp)
GGAGAGCCCCTGATGACATCTCGAG
LOC_Os01g07800
OsAffx.23156.1.S1_at--969--2091Chr01:3738157..3738181 (25 bp)
ACATCTCGAGTGTGGTTCTTGTCGA
LOC_Os01g07800
OsAffx.23156.1.S1_at--970--8131Chr01:3737996..3738017 (22 bp)
GGACAGGTCCTACATCAAGTCTGAA
LOC_Os01g07800
OsAffx.23156.1.S1_at--483--10631Chr01:3737710..3737734 (25 bp)
TTCCTGAGGGACTTCGCGTACGACA
LOC_Os01g07800
OsAffx.23156.1.S1_at--1120--9031Chr01:3737681..3737705 (25 bp)
TGCAGACAACCGGTACGCAGTGTTT
LOC_Os01g07800
Target Sequence 
ATCATGCTCTTCGACGGTGTGTGCAACCTCTGCAACGGCGGCGTCCGGTTCGTCCAGGAGCATGACCCCAACAGAAGCAT
CAGGTATATCCCGTTGCAGAGCGAATCCGGGAGGAAGCTCCTTCAGAGGTCAGGGAGAGCCCCTGATGACATCTCGAGTG
TGGTTCTTGTCGAGAAGGACAGGTCCTACATCAAGTCTGAAGCAGTGCTGAGGATAATGGGGTATCTCAACCTGCCTTTT
CCTCAGCTAGCCACCTTCCTCAACTTTGTCCCTCTGTTCCTGAGGGACTTCGCGTACGACAATGTTGCAGACAACCGGTA
CGCAGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis