Browse Element(s) Details


OsAffx.23165.1.S1_x_at

Description gb:NM_189585.1
DB_XREF= gi:34906253
GEN=P0489A01.12
TID=OsAffx.23165.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A01.12 (P0489A01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0879011/11Histone-like transcription factor and archaeal histone family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23165.1.S1_x_at--259--952Chr01:4412345..4412369 (25 bp)
AGGAAGCCATCGATGCGGTCGCCGG
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--102--8391Chr01:4412418..4412442 (25 bp)
GGCGAATGCCATGGCCGATGAGGCC
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--1012--8411Chr01:4412439..4412463 (25 bp)
GGCCGATGAGGCGATGGAGCCGGAA
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--1045--3351Chr01:4412505..4412529 (25 bp)
CACCGAGCCGATGGAGCAAGTCGAA
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--1042--9611Chr01:4412597..4412621 (25 bp)
TCATCCGGGTGGACCGTGACATCAA
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--931--4251Chr01:4412601..4412625 (25 bp)
CCGGGTGGACCGTGACATCAAGAAG
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--1052--7751Chr01:4412607..4412631 (25 bp)
GGACCGTGACATCAAGAAGGTGACC
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--751--2891Chr01:4412623..4412647 (25 bp)
AAGGTGACCAACGAGGCGGCGCTGC
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--1035--971Chr01:4412868..4412892 (25 bp)
AGGAGAGGCAAAGCCGTTGCCACGT
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--945--931Chr01:4412873..4412897 (25 bp)
AGGCAAAGCCGTTGCCACGTGGGAC
LOC_Os01g08790
OsAffx.23165.1.S1_x_at--844--3271Chr01:4412876..4412900 (25 bp)
CAAAGCCGTTGCCACGTGGGACCCG
LOC_Os01g08790
Target Sequence 
AGGAAGCCATCGATGCGGTCGCCGGCGAGGCCGGCGAGGTGATGAAGGAAGTCGTCGAAGGGGAGCGGGAGGAGGCGAAT
GCCATGGCCGATGAGGCCGATGAGGCGATGGAGCCGGAAGGGGAGCGGGAGGAGGAGGCAGACGCCGTCGCCGACGAGGC
CACCGAGCCGATGGAGCAAGTCGAAGGGGAGGGGGAGGATGGCGACGCCGCCGCGCAACGGCCGGCGCTGCCGCTGGGGA
GGGTGAAGCGGATCATCCGGGTGGACCGTGACATCAAGAAGGTGACCAACGAGGCGGCGCTGCTCATCGCCGCGGCCACG
GAGCTCTTCGTCGGCTCCCTCGCCGCGGGCGCCCACAGGGCCGCCTCCCGGCGCGGCCGGCGCGCGGTGCGTGCCGTGCA
CGTGCGGGCCGCCGCGCGCGAGCACCGCCCCACCGCCGACTTCCTCCTCGACTGCCTCCCCGCCGCCGAGGAGGCGGCGC
CTGCTCGCGCGGCTGCCGCCGGTCCCAGCCGCGGCGGCGGAAGAGGAGAGGCAAAGCCGTTGCCACGTGGGACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23165.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis