Browse Element(s) Details


OsAffx.23168.1.S1_at

Description tigr:9629.m00846
TID=OsAffx.23168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0903011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23168.1.S1_at--378--1011Chr01:4543022..4543046 (25 bp)
AGGATTCCTTGGTTTCTTGCAGCGC
LOC_Os01g09030
OsAffx.23168.1.S1_at--866--10551Chr01:4543035..4543059 (25 bp)
TTCTTGCAGCGCATGATGTAACTTT
LOC_Os01g09030
OsAffx.23168.1.S1_at--1094--251Chr01:4543089..4543113 (25 bp)
ATAGGTCCTCCTTTGGTCATAACTA
LOC_Os01g09030
OsAffx.23168.1.S1_at--320--9811Chr01:4543108..4543132 (25 bp)
TAACTAGACCACGTTCATCATCACT
LOC_Os01g09030
OsAffx.23168.1.S1_at--1000--9511Chr01:4543125..4543149 (25 bp)
TCATCACTTAAACTGGAGGACCTAA
LOC_Os01g09030
OsAffx.23168.1.S1_at--223--6631Chr01:4543185..4543209 (25 bp)
GTTGTGTAGGCCTTTGCTGTATTTT
LOC_Os01g09030
OsAffx.23168.1.S1_at--389--10791Chr01:4543216..4543240 (25 bp)
TTGTTCATTTCTGTGTTTTCTTGTG
LOC_Os01g09030
OsAffx.23168.1.S1_at--449--10311Chr01:4543232..4543256 (25 bp)
TTTCTTGTGTCTCTAGTCTGTACCA
LOC_Os01g09030
OsAffx.23168.1.S1_at--688--1151Chr01:4543246..4543270 (25 bp)
AGTCTGTACCAGTTAGCAGTGTAGC
LOC_Os01g09030
OsAffx.23168.1.S1_at--1152--5011Chr01:4543261..4543285 (25 bp)
GCAGTGTAGCATTGGATTGCCTGAT
LOC_Os01g09030
OsAffx.23168.1.S1_at--640--4471Chr01:4543279..4543303 (25 bp)
GCCTGATTCATCATGTTCCCAAGTA
LOC_Os01g09030
Target Sequence 
AGGATTCCTTGGTTTCTTGCAGCGCATGATGTAACTTTCATTTGGTGTAAATACATCGCTGGAGAAAATAGGTCCTCCTT
TGGTCATAACTAGACCACGTTCATCATCACTTAAACTGGAGGACCTAAATTGCTTAGTAATAAAAACATGCTCGGTAATT
GAGGTTGTGTAGGCCTTTGCTGTATTTTTTTTTCTTGTTCATTTCTGTGTTTTCTTGTGTCTCTAGTCTGTACCAGTTAG
CAGTGTAGCATTGGATTGCCTGATTCATCATGTTCCCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis