Browse Element(s) Details


OsAffx.23219.1.S1_at

Description tigr:9629.m01246
TID=OsAffx.23219.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g127808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23219.1.S1_at--393--10171Chr01:7073644..7073668 (25 bp)
TATACCGGAGGAAGTTCGCCGCCCG
NONE
OsAffx.23219.1.S1_at--558--9251Chr01:7073611..7073635 (25 bp)
TCCTCATCAGGAACGACTACGGCGT
NONE
OsAffx.23219.1.S1_at--924--4111Chr01:7073575..7073599 (25 bp)
CGCACCGGCGGCTCATCAGGATGAC
NONE
OsAffx.23219.1.S1_at--277--9451Chr01:7073545..7073569 (25 bp)
TCGGCTACTGGATCGTCTACGACCT
LOC_Os01g12780
OsAffx.23219.1.S1_at--496--3791Chr01:7073522..7073546 (25 bp)
CTCGACGCCAAGGAGCTGAGGACGT
LOC_Os01g12780
OsAffx.23219.1.S1_at--1028--971Chr01:7073317..7073341 (25 bp)
AGGAGAGCGATCAGCGACAGCAGCT
LOC_Os01g12780
OsAffx.23219.1.S1_at--969--6651Chr01:7073249..7073273 (25 bp)
GTTGACGATGGCAAGCTCCGGGCAT
LOC_Os01g12780
OsAffx.23219.1.S1_at--835--4471Chr01:7073140..7073164 (25 bp)
GCCTGCTTGGTATTCTACTGTGGAT
LOC_Os01g12780
OsAffx.23219.1.S1_at--662--9531Chr01:7073127..7073151 (25 bp)
TCTACTGTGGATACTTGCTGCGGAA
LOC_Os01g12780
OsAffx.23219.1.S1_at--507--9891Chr01:7073116..7073140 (25 bp)
TACTTGCTGCGGAAATCGTGCTGCT
LOC_Os01g12780
OsAffx.23219.1.S1_at--748--3051Chr01:7073103..7073127 (25 bp)
AATCGTGCTGCTGTTCGTTTACAAA
LOC_Os01g12780
Target Sequence 
TATACCGGAGGAAGTTCGCCGCCCGCTCGTCTTTCCTCATCAGGAACGACTACGGCGTGTGGTCGCAGGCGCACCGGCGG
CTCATCAGGATGACGCGCCTCGGCTACTGGATCGTCTACGACCTCGACGCCAAGGAGCTGAGGACGTGGTACGAGGAGAG
GCTCCTGCGGGACCGCGGCATGGCGCGGTGGCCGGAGTACGGCGCCGGCGACAGGGAGGAGGTCCGGTCGCTGATCGCCA
GGGTGAGGGAGGAGTACTGGCGCCGCATGCCCGAGCACCGGAGGCAGAAGTTCGTGGCGAGACTCGAGGAGGAGCGGCGG
CTCAAAGAGGAGAGCGATCAGCGACAGCAGCTCGCGGCGGCGGCCGACGAGCGCCGCGGGGCGCAGATGGCCGCGGTTGA
CGATGGCAAGCTCCGGGCATCGTCGCGGTCGTCGACGCAGCCTCCTCCTCGTCGTCGTCGTCGTCGTCGTCGTTGGGCTC
CGCCGCCGCCGCCGCCGCCGCCTCGCCTGCTTGGTATTCTACTGTGGATACTTGCTGCGGAAATCGTGCTGCTGTTCGTT
TACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis