Browse Element(s) Details


OsAffx.23257.1.S1_at

Description gb:NM_187911.1
DB_XREF= gi:34902905
TID=OsAffx.23257.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1525011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23257.1.S1_at--175--6131Chr01:8532818..8532842 (25 bp)
GAGGACGACTCGTACTACTTGTACA
LOC_Os01g15250
OsAffx.23257.1.S1_at--959--5711Chr01:8532812..8532836 (25 bp)
GACTCGTACTACTTGTACAGGCCGT
LOC_Os01g15250
OsAffx.23257.1.S1_at--482--8511Chr01:8532784..8532808 (25 bp)
TGGACGGTCCGCACTGCCTGTTCTA
LOC_Os01g15250
OsAffx.23257.1.S1_at--851--8791Chr01:8532766..8532790 (25 bp)
TGTTCTACGGCAGGCGCAAGCTGAC
LOC_Os01g15250
OsAffx.23257.1.S1_at--312--1911Chr01:8532646..8532670 (25 bp)
ACGTGCTGGTGTGGCGATCTCCCAT
LOC_Os01g15250
OsAffx.23257.1.S1_at--517--311Chr01:8532623..8532647 (25 bp)
ATACCACCGCACTGCAGCTACGTAG
LOC_Os01g15250
OsAffx.23257.1.S1_at--1112--5051Chr01:8532610..8532634 (25 bp)
GCAGCTACGTAGCAACGTGCGACAT
LOC_Os01g15250
OsAffx.23257.1.S1_at--917--2771Chr01:8532582..8532606 (25 bp)
AAGAGCGCAGCAGTTCGTCGTGGCT
LOC_Os01g15250
OsAffx.23257.1.S1_at--322--3651Chr01:8532559..8532583 (25 bp)
CTTCTGGCGGCAGGAGGCCATTCGA
LOC_Os01g15250
OsAffx.23257.1.S1_at--983--2351Chr01:8532528..8532552 (25 bp)
AAAGCCGAGCGGGAATTTGGATCAT
LOC_Os01g15250
OsAffx.23257.1.S1_at--1093--6431Chr01:8532509..8532533 (25 bp)
GATCATGGTGAGTGCCTTAACAAGA
LOC_Os01g15250
Target Sequence 
GAGGACGACTCGTACTACTTGTACAGGCCGTCCATGGACGGTCCGCACTGCCTGTTCTACGGCAGGCGCAAGCTGACGAC
GTGGACGCCGGCGGCGAGCACGACACCGACGGTGACGATGCAGGACCTGCTCAGCGGCCGCGTGGTGCCCGGCGTGGACA
CGCCGCGCTTCGACGTGCTGGTGTGGCGATCTCCCATACCACCGCACTGCAGCTACGTAGCAACGTGCGACATGGGAAGA
GCGCAGCAGTTCGTCGTGGCTTCTGGCGGCAGGAGGCCATTCGAGAGGAGAAAGCCGAGCGGGAATTTGGATCATGGTGA
GTGCCTTAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis