Browse Element(s) Details


OsAffx.23276.1.S1_at

Description tigr:9629.m01647
TID=OsAffx.23276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ATP-dependent Clp protease proteolytic subunit ClpR4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1653011/11Clp protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23276.1.S1_at--830--6891Chr01:9377565..9377589 (25 bp)
GTATCAGTAGTCTTTGCTTCCAAGA
LOC_Os01g16530
OsAffx.23276.1.S1_at--608--9531Chr01:9377562..9377586 (25 bp)
TCAGTAGTCTTTGCTTCCAAGAAAT
LOC_Os01g16530
OsAffx.23276.1.S1_at--264--7151Chr01:9377556..9377580 (25 bp)
GTCTTTGCTTCCAAGAAATACGAGG
LOC_Os01g16530
OsAffx.23276.1.S1_at--273--6431Chr01:9377526..9377550 (25 bp)
GATCTTATTCTTCTGACCTTTAATG
LOC_Os01g16530
OsAffx.23276.1.S1_at--313--10411Chr01:9377522..9377546 (25 bp)
TTATTCTTCTGACCTTTAATGTGCA
LOC_Os01g16530
OsAffx.23276.1.S1_at--541--9571Chr01:9377518..9377542 (25 bp)
TCTTCTGACCTTTAATGTGCAGCCA
LOC_Os01g16530
OsAffx.23276.1.S1_at--131--8932Chr01:9415733..9415752 (20 bp)
TGACCTTTAATGTGCAGCCAATTGG
NONE
OsAffx.23276.1.S1_at--576--4312Chr01:9415733..9415755 (23 bp)
CCTTTAATGTGCAGCCAATTGGTCG
NONE
OsAffx.23276.1.S1_at--360--5571Chr01:9376282..9376616 (25 bp)
GAAATGATTAAGCTGCTGTCAAGGC
LOC_Os01g16530
OsAffx.23276.1.S1_at--690--2691Chr01:9376273..9376297 (25 bp)
AAGCTGCTGTCAAGGCATATCGGTA
LOC_Os01g16530
OsAffx.23276.1.S1_at--247--8711Chr01:9376266..9376290 (25 bp)
TGTCAAGGCATATCGGTAAATCAGT
LOC_Os01g16530
Target Sequence 
GTATCAGTAGTCTTTGCTTCCAAGAAATACGAGGATAATGATCTTATTCTTCTGACCTTTAATGTGCAGCCAATTGGTCG
CTTTCAAGGACAGGCGACAGATGTTGACATAGCAAGAAAAGAAATCCGAAATGTGAAAATAGAAATGATTAAGCTGCTGT
CAAGGCATATCGGTAAATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis