Browse Element(s) Details


OsAffx.23307.1.S1_at

Description gb:NM_189183.1
DB_XREF= gi:34905449
GEN=P0487H02.19
TID=OsAffx.23307.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487H02.19 (P0487H02.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1939011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23307.1.S1_at--735--5811Chr01:10966633..10966657 (25 bp)
GACCCGGTCTACATTGCAGCGATGC
LOC_Os01g19390
OsAffx.23307.1.S1_at--1101--2451Chr01:10966606..10966630 (25 bp)
AACAAGAAGGTCTCGGCCGTCACCT
LOC_Os01g19390
OsAffx.23307.1.S1_at--880--1631Chr01:10966564..10966588 (25 bp)
AGCGAGTGGATATCGCCGATCCCGA
LOC_Os01g19390
OsAffx.23307.1.S1_at--707--1031Chr01:10966389..10966413 (25 bp)
AGGTCTACCTGGTGGCTCTGGTGAA
LOC_Os01g19390
OsAffx.23307.1.S1_at--1064--5451Chr01:10966367..10966391 (25 bp)
GAACTGGTCCGACATGTTCTACGGC
LOC_Os01g19390
OsAffx.23307.1.S1_at--1034--10311Chr01:10966351..10966375 (25 bp)
TTCTACGGCAACTCCACCGGAAGAA
LOC_Os01g19390
OsAffx.23307.1.S1_at--856--5171Chr01:10966326..10966350 (25 bp)
GCAAGTGCCTGGACAGCTTCTACTA
LOC_Os01g19390
OsAffx.23307.1.S1_at--426--4911Chr01:10966311..10966335 (25 bp)
GCTTCTACTACTTCATGAATCCGCG
LOC_Os01g19390
OsAffx.23307.1.S1_at--316--3251Chr01:10966251..10966275 (25 bp)
CAACCAGGATGGTCGTGGATGGCAA
LOC_Os01g19390
OsAffx.23307.1.S1_at--107--7871Chr01:10966167..10966191 (25 bp)
GGTTTGAATGCACCAAGTTCACCCG
LOC_Os01g19390
OsAffx.23307.1.S1_at--333--8911Chr01:10966142..10966166 (25 bp)
TGAGAATAAGTACCTGGCGCTGGCA
LOC_Os01g19390
Target Sequence 
GACCCGGTCTACATTGCAGCGATGCTCAACAAGAAGGTCTCGGCCGTCACCTACAGCGTCAGCCGCCTCAGCGAGTGGAT
ATCGCCGATCCCGACCATCCGGCTGACCCGGGATCGCGACGAGGACCGGAGGAGGATGGAGGAGGCGCTGCGGCGGGGCG
ACCTGGTGGTCTGCCCCGAGGGGACGACCTGCCGCGAGCCCTACCTCCTCCGGTTCAGCCCGCTGTCGCTGGAGCTCGTC
GACGAGGTCTACCTGGTGGCTCTGGTGAACTGGTCCGACATGTTCTACGGCAACTCCACCGGAAGAAGCAAGTGCCTGGA
CAGCTTCTACTACTTCATGAATCCGCGCCCGGCTTACGATGTCGAGTTCATGGAGAAGGTGCCAACCAGGATGGTCGTGG
ATGGCAAGACCTGTGAGAGCAAACATGTGGCCAACATGGTGCAGGGTGAGATTGGTAGAGTGCTTGGGTTTGAATGCACC
AAGTTCACCCGTGAGAATAAGTACCTGGCGCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis