Browse Element(s) Details


OsAffx.23357.1.S1_at

Description gb:NM_183925.1
DB_XREF= gi:34894977
GEN=B1088D01.11
TID=OsAffx.23357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088D01.11 (B1088D01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2373011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23357.1.S1_at--945--8011Chr01:13331312..13331336 (25 bp)
GGAGATTTACCATACCCTATTGCCA
LOC_Os01g23730
OsAffx.23357.1.S1_at--574--10211Chr01:13331329..13331353 (25 bp)
TATTGCCACCGTCAGAAACAGATCT
LOC_Os01g23730
OsAffx.23357.1.S1_at--333--8191Chr01:13331371..13331395 (25 bp)
GGAAGAATGCCTCACCTCCAAAGTT
LOC_Os01g23730
OsAffx.23357.1.S1_at--965--4991Chr01:13331406..13331430 (25 bp)
GCATGGTTGCTCTCAAAGGACCGAT
LOC_Os01g23730
OsAffx.23357.1.S1_at--796--2891Chr01:13331421..13331445 (25 bp)
AAGGACCGATTGTCAACTGCCAAAA
LOC_Os01g23730
OsAffx.23357.1.S1_at--674--9171Chr01:13331532..13331556 (25 bp)
TGCCCCTTTGCAACAGCTTTTTGGA
LOC_Os01g23730
OsAffx.23357.1.S1_at--425--1311Chr01:13331565..13331589 (25 bp)
AGAGTTCCGCCTAATGTGACCGAAG
LOC_Os01g23730
OsAffx.23357.1.S1_at--721--5311Chr01:13331586..13331610 (25 bp)
GAAGTGAGCAACATCCATCTCTTAG
LOC_Os01g23730
OsAffx.23357.1.S1_at--211--2451Chr01:13331635..13331659 (25 bp)
AACACTTCAAGACCTTCTATCTACT
LOC_Os01g23730
OsAffx.23357.1.S1_at--566--1411Chr01:13331685..13331709 (25 bp)
AGACATGATGTCGTCTTCCGTGACT
LOC_Os01g23730
OsAffx.23357.1.S1_at--304--2571Chr01:13331725..13331749 (25 bp)
AACGGTTGATCCTACGCTGCAAGGA
LOC_Os01g23730
Target Sequence 
GGAGATTTACCATACCCTATTGCCACCGTCAGAAACAGATCTAGTTCACAACTTCATCTGGAAGAATGCCTCACCTCCAA
AGTTTAAATTCTTTGCATGGTTGCTCTCAAAGGACCGATTGTCAACTGCCAAAAACCTATTTACCAAAATAATCCTCCAA
TCACCTCAATGTGCAATCCGCCAGACAGGGGAAGAAACGTCAAATCATCTCTTCTTCATGTGCCCCTTTGCAACAGCTTT
TTGGACGACAATCAGAGTTCCGCCTAATGTGACCGAAGTGAGCAACATCCATCTCTTAGCCCGGCCACCTAACATTCCAT
CAAAACACTTCAAGACCTTCTATCTACTCTGCTTTTGGGGTCTCTGGAATCGCAGACATGATGTCGTCTTCCGTGACTTC
CAACCGTCAGTCCAACGGTTGATCCTACGCTGCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis