Browse Element(s) Details


OsAffx.23364.1.S1_at

Description gb:NM_183949.1
DB_XREF= gi:34895025
GEN=B1045F02.8
TID=OsAffx.23364.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1045F02.8 (B1045F02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g239909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23970OsAffx.23363.1.S1_at11/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.16867.1.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.28164.2.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23980OsAffx.22848.4.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23980OsAffx.22848.3.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23990OsAffx.23364.1.S1_x_at9/111+13490800..13491351expressed protein
LOC_Os01g23990OsAffx.23364.1.S1_at9/111+13490800..13491351expressed protein
LOC_Os01g24010Os.31870.1.S1_at11/111+13499999..13510961PDR5-like ABC transporter, putative, expressed
LOC_Os01g24020Os.11283.1.S1_at10/111+13505969..13514208expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23364.1.S1_at--687--9251NONE
TCCTCATCGCTTCGGACGACATGGA
NONE
OsAffx.23364.1.S1_at--945--9611NONE
TCATCGCTTCGGACGACATGGAGGC
NONE
OsAffx.23364.1.S1_at--867--2111Chr01:13491282..13491306 (25 bp)
ACATGGAGGCGTCAGCTGCTGATCA
LOC_Os01g23990
OsAffx.23364.1.S1_at--802--8551Chr01:13491279..13491303 (25 bp)
TGGAGGCGTCAGCTGCTGATCATCA
LOC_Os01g23990
OsAffx.23364.1.S1_at--207--4651Chr01:13491274..13491298 (25 bp)
GCGTCAGCTGCTGATCATCACGGTG
LOC_Os01g23990
OsAffx.23364.1.S1_at--91--5791Chr01:13491236..13491260 (25 bp)
GACGACGAAGAAGATCATCAGCCAG
LOC_Os01g23990
OsAffx.23364.1.S1_at--651--5371Chr01:13491230..13491254 (25 bp)
GAAGAAGATCATCAGCCAGGGCTCC
LOC_Os01g23990
OsAffx.23364.1.S1_at--711--1451Chr01:13491228..13491252 (25 bp)
AGAAGATCATCAGCCAGGGCTCCGA
LOC_Os01g23990
OsAffx.23364.1.S1_at--688--1271Chr01:13491225..13491249 (25 bp)
AGATCATCAGCCAGGGCTCCGACGG
LOC_Os01g23990
OsAffx.23364.1.S1_at--513--391Chr01:13491220..13491244 (25 bp)
ATCAGCCAGGGCTCCGACGGCATCG
LOC_Os01g23990
OsAffx.23364.1.S1_at--468--4691Chr01:13491186..13491210 (25 bp)
GCGGCGGTAAGTCGAGGGTGGACCT
LOC_Os01g23990
Target Sequence 
TCCTCATCGCTTCGGACGACATGGAGGCGTCAGCTGCTGATCATCACGGTGGCCACCACCACCAGACGACGAAGAAGATC
ATCAGCCAGGGCTCCGACGGCATCGGCGGCGGCGGCGGCGGTAAGTCGAGGGTGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis