Browse Element(s) Details


OsAffx.23395.2.S1_at

Description tigr:9629.m02499
TID=OsAffx.23395.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2574011/11powdery mildew resistance protein PM3b, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25688Os.46862.1.S1_at2/111+14544721..14547162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25700NANA1+14549702..14552729transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25710NANA1+14554229..14555648transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25720Os.49396.1.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.1.S2_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.2.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23395.2.S1_at--853--291Chr01:14570811..14570835 (25 bp)
ATAGCATCCTAGTATCCTCTGCAGA
LOC_Os01g25740
OsAffx.23395.2.S1_at--333--9471Chr01:14570794..14570818 (25 bp)
TCTGCAGATGCACCTTTGGCAACAA
LOC_Os01g25740
OsAffx.23395.2.S1_at--89--191Chr01:14570763..14570787 (25 bp)
ATTTACCTTGTATGGAGTCTCTAAC
LOC_Os01g25740
OsAffx.23395.2.S1_at--754--10431Chr01:14570719..14570743 (25 bp)
TTAGTAGTGCTTCTCAATTTTCCCC
LOC_Os01g25740
OsAffx.23395.2.S1_at--324--5591Chr01:14570683..14570707 (25 bp)
GAAATACACATTTGGAGTTGCCCTG
LOC_Os01g25740
OsAffx.23395.2.S1_at--775--1231Chr01:14570668..14570692 (25 bp)
AGTTGCCCTGAGCTTAGATCTATAA
LOC_Os01g25740
OsAffx.23395.2.S1_at--1096--9791Chr01:14570597..14570621 (25 bp)
TAACGGCATGGCTATATCAGAATCT
LOC_Os01g25740
OsAffx.23395.2.S1_at--820--3291Chr01:14570519..14570543 (25 bp)
CAAATATCTCCTGCCATGCTTAGAA
LOC_Os01g25740
OsAffx.23395.2.S1_at--691--6931Chr01:14570464..14570488 (25 bp)
GTAGAGGTTCTTGCTCTTCCTTCAT
LOC_Os01g25740
OsAffx.23395.2.S1_at--366--5551Chr01:14570299..14570323 (25 bp)
GAAACTGTCTCCATTGTCGGCTGCG
LOC_Os01g25740
OsAffx.23395.2.S1_at--1070--7171Chr01:14570284..14570308 (25 bp)
GTCGGCTGCGAGAACATGGCATCGT
LOC_Os01g25740
Target Sequence 
ATAGCATCCTAGTATCCTCTGCAGATGCACCTTTGGCAACAAATACACATTTACCTTGTATGGAGTCTCTAACAGTGATA
AGTTGTCAAAGCTTAGTAGTGCTTCTCAATTTTCCCCTATATCTGAAGGAAATACACATTTGGAGTTGCCCTGAGCTTAG
ATCTATAAGGGGAAAGCAGGATATAAAAGTCGAAAGTAAATATGTTGAGCGTAATAACGGCATGGCTATATCAGAATCTA
GCAGTGATCTCAGTGCATCTATAACTATAGAAGATCAAGGAACATGGAGAAGCAAATATCTCCTGCCATGCTTAGAATAC
CTAAGAATAGCATATTGTGTAAGCTTGGTAGAGGTTCTTGCTCTTCCTTCATCCATGAGAACTATAATTATTTCAGAGTG
TCCTAAGCTTGAAGTCCTGTCAGGGAAGCTTGATAAACTTGGGCAACTAGATATTCGATTTTGTGAAAAGCTGAAACTAG
TGGAGTCATACGAAGGATCCTTCTCATCATTGGAAACTGTCTCCATTGTCGGCTGCGAGAACATGGCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23395.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis