Browse Element(s) Details


OsAffx.23420.1.S1_at

Description tigr:9629.m02643
TID=OsAffx.23420.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2765011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27600Os.31536.1.S1_at11/111+15720304..15722634expressed protein
LOC_Os01g27620OsAffx.2097.1.S1_at10/111+15732147..15733119hypothetical protein
LOC_Os01g27630Os.16500.1.S1_at10/111+15737644..15738926Glutathione S-transferase I, putative, expressed
LOC_Os01g27640OsAffx.24866.1.S1_at10/111+15739981..15742657retrotransposon protein, putative, unclassified
LOC_Os01g27650OsAffx.23420.1.S1_at11/111+15745777..15747984pentatricopeptide, putative
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23420.1.S1_at--908--131Chr01:15746306..15746330 (25 bp)
ATTATGGTTTAACTCCTAGGCTGGA
LOC_Os01g27650
OsAffx.23420.1.S1_at--296--3711Chr01:15746291..15746315 (25 bp)
CTAGGCTGGATCACTATGCTTGCAT
LOC_Os01g27650
OsAffx.23420.1.S1_at--1088--91Chr01:15746259..15746283 (25 bp)
ATTCTTAGCCGAGCAGGGATGCTTA
LOC_Os01g27650
OsAffx.23420.1.S1_at--1027--6091Chr01:15746214..15746238 (25 bp)
GAGTCCATTACTATTGACCACGGAA
LOC_Os01g27650
OsAffx.23420.1.S1_at--905--971Chr01:15746167..15746191 (25 bp)
AGGAGCATGTCGCTCTTTGCGAGAT
LOC_Os01g27650
OsAffx.23420.1.S1_at--1130--7831Chr01:15746100..15746124 (25 bp)
GGTACCGGAGATTCCTCAGCATATA
LOC_Os01g27650
OsAffx.23420.1.S1_at--156--2411Chr01:15746065..15746089 (25 bp)
AAACATCTATGCTTCCCAGAGAAAA
LOC_Os01g27650
OsAffx.23420.1.S1_at--229--3891Chr01:15745972..15745996 (25 bp)
CTGGGTTGAGCTTAACAGCCGAGTT
LOC_Os01g27650
OsAffx.23420.1.S1_at--1145--3371Chr01:15745957..15745981 (25 bp)
CAGCCGAGTTCATGTGTTTGTAGTT
LOC_Os01g27650
OsAffx.23420.1.S1_at--305--5311Chr01:15745860..15745884 (25 bp)
GAAGGTTACCACTCATCATCTAAGT
LOC_Os01g27650
OsAffx.23420.1.S1_at--679--1371Chr01:15745822..15745846 (25 bp)
AGAGCTGGGTCCATTGGCAGAATCT
LOC_Os01g27650
Target Sequence 
ATTATGGTTTAACTCCTAGGCTGGATCACTATGCTTGCATGGTTGATATTCTTAGCCGAGCAGGGATGCTTAAGGAAGCA
AAGGATTTCATAGAGTCCATTACTATTGACCACGGAACATGTTTGTGGCGTATAGTACTAGGAGCATGTCGCTCTTTGCG
AGATTTTGATGTCGGAGCATATGCTGGTGAACGGTTGATGGAGTTAGGTACCGGAGATTCCTCAGCATATATATTGCTGT
CAAACATCTATGCTTCCCAGAGAAAATGGAATGATGTTGAAAGGGTGAGGCATTTGATGAGACTTCGAGGAGTTAACAAA
GATCCTGGATGTAGCTGGGTTGAGCTTAACAGCCGAGTTCATGTGTTTGTAGTTGGCGAACAGCAGCATCCTGAAGCAGA
AAATATAAATGCACAGCTGAGAAGGCTAGCTAAACACATGAAGGATGAAGGTTACCACTCATCATCTAAGTTATCGTTTG
ATGAAGAGCTGGGTCCATTGGCAGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis