Browse Element(s) Details


OsAffx.23506.1.S1_at

Description tigr:9629.m03212
TID=OsAffx.23506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g342609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23506.1.S1_at--27--3451Chr01:19217013..19217033 (21 bp)
CAGTCACCATGCTGTCGATGGCGTT
NONE
OsAffx.23506.1.S1_at--418--7111NONE
GTCACCATGCTGTCGATGGCGTTGG
NONE
OsAffx.23506.1.S1_at--376--971Chr01:19215170..19215194 (25 bp)
AGGAGCTGCTTCGAAGCAGCGTCAT
LOC_Os01g34260
OsAffx.23506.1.S1_at--1141--10611Chr01:19215161..19215185 (25 bp)
TTCGAAGCAGCGTCATCCCAGCGAT
LOC_Os01g34260
OsAffx.23506.1.S1_at--549--5391Chr01:19215158..19215182 (25 bp)
GAAGCAGCGTCATCCCAGCGATGGT
LOC_Os01g34260
OsAffx.23506.1.S1_at--771--1631Chr01:19215154..19215177 (24 bp)
AGCGTCATCCCAGCGATGGTGCAGT
LOC_Os01g34260
OsAffx.23506.1.S1_at--284--9611Chr01:19215154..19215173 (20 bp)
TCATCCCAGCGATGGTGCAGTGGCG
LOC_Os01g34260
OsAffx.23506.1.S1_at--502--9051Chr01:19215083..19215105 (23 bp)
TGCAGTGGCGTGGACCGTGGCGGCC
LOC_Os01g34260
OsAffx.23506.1.S1_at--583--4531Chr01:19215061..19215085 (25 bp)
GCCGCCTATGCGAAGGAGCCCTGCG
LOC_Os01g34260
OsAffx.23506.1.S1_at--516--3691Chr01:19215056..19215080 (25 bp)
CTATGCGAAGGAGCCCTGCGCTGAG
LOC_Os01g34260
OsAffx.23506.1.S1_at--223--971Chr01:19215048..19215072 (25 bp)
AGGAGCCCTGCGCTGAGGCGGAGAC
LOC_Os01g34260
Target Sequence 
CAGTCACCATGCTGTCGATGGCGTTGGGGGCAAGGAGGTTGATGAGGATAGCGGCGGTGTCGGAGCCGATGTCGAGGATA
GATGAGCAGTGTGCAGAGAACAAAGGAGGAGCTGCTTCGAAGCAGCGTCATCCCAGCGATGGTGCAGTGGCGTGGACCGT
GGCGGCCGCCTATGCGAAGGAGCCCTGCGCTGAGGCGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis