Browse Element(s) Details


OsAffx.23508.1.S1_at

Description gb:NM_193161.1
DB_XREF= gi:34913405
GEN=B1074C08.26
TID=OsAffx.23508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1074C08.26 (B1074C08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g344201/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23508.1.S1_at--365--9991Chr01:19305001..19305084 (25 bp)
TACCACTTCGAAGAGTGGCTGTTGT
LOC_Os01g34420
OsAffx.23508.1.S1_at--569--8111Chr01:19305776..19306222 (25 bp)
GGACATTCCTTAGTGGTATGGCAGA
NONE
OsAffx.23508.1.S1_at--518--9231Chr01:19305782..19306228 (25 bp)
TCCTTAGTGGTATGGCAGATTTTCA
NONE
OsAffx.23508.1.S1_at--993--5031Chr01:19306218..19306242 (25 bp)
GCAGATTTTCAGCATGTTGTTCCAG
NONE
OsAffx.23508.1.S1_at--622--10331Chr01:19306224..19306248 (25 bp)
TTTCAGCATGTTGTTCCAGTGCATG
NONE
OsAffx.23508.1.S1_at--572--7331Chr01:19306242..19306266 (25 bp)
GTGCATGCTGCAGAAACGAGAAAAA
NONE
OsAffx.23508.1.S1_at--562--5511Chr01:19306267..19306291 (25 bp)
GAAAACATCCGGAGTGTCCAAATAA
NONE
OsAffx.23508.1.S1_at--318--1431Chr01:19306295..19306319 (25 bp)
AGAACATTTGTGTAACGGTAGCTTA
NONE
OsAffx.23508.1.S1_at--552--7051Chr01:19306306..19306330 (25 bp)
GTAACGGTAGCTTACCTTCTGATCC
NONE
OsAffx.23508.1.S1_at--883--6951Chr01:19306312..19306336 (25 bp)
GTAGCTTACCTTCTGATCCTGTACT
NONE
OsAffx.23508.1.S1_at--1155--3651Chr01:19306316..19306340 (25 bp)
CTTACCTTCTGATCCTGTACTTTCA
NONE
Target Sequence 
TACCACTTCGAAGAGTGGCTGTTGTGTTGTGTGCTTGTCCTGTTAGAACAGTTGGCCCGAGTTTACTTCATGGAAGATCT
AAACAAGCTTGCTCGGTGGATGCTCAGAAAAAAAAATCTTCATTATTTAAGGACCACACCAAAATAGTTGTTTATGTTAG
AATGATTTGGGGGTGTGTCCAGGATCAAACCCCATTGAACGGCATCTTTGAGAAGGCCACTAGGGTTTGCATAAGTGTGA
ACTCACATAAAATTAGTGGTGAGAATGAGAATAGGACATTCCTTAGTGGTATGGCAGATTTTCAGCATGTTGTTCCAGTG
CATGCTGCAGAAACGAGAAAAAGAAAACATCCGGAGTGTCCAAATAATAAAGAACATTTGTGTAACGGTAGCTTACCTTC
TGATCCTGTACTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis