Browse Element(s) Details


OsAffx.23554.3.S1_at

Description tigr:9629.m03642
TID=OsAffx.23554.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3838011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23554.3.S1_at--1153--2671Chr01:21882473..21882497 (25 bp)
AAGCTGGCGGTGACTCTGCACAGGT
LOC_Os01g38380
OsAffx.23554.3.S1_at--705--4711Chr01:21882471..21882495 (25 bp)
GCTGGCGGTGACTCTGCACAGGTTC
LOC_Os01g38380
OsAffx.23554.3.S1_at--941--8471Chr01:21882469..21882493 (25 bp)
TGGCGGTGACTCTGCACAGGTTCCT
LOC_Os01g38380
OsAffx.23554.3.S1_at--708--4671Chr01:21882467..21882491 (25 bp)
GCGGTGACTCTGCACAGGTTCCTGT
LOC_Os01g38380
OsAffx.23554.3.S1_at--61--7771Chr01:21882465..21882489 (25 bp)
GGTGACTCTGCACAGGTTCCTGTAT
LOC_Os01g38380
OsAffx.23554.3.S1_at--616--7371Chr01:21882464..21882488 (25 bp)
GTGACTCTGCACAGGTTCCTGTATA
LOC_Os01g38380
OsAffx.23554.3.S1_at--747--5711Chr01:21882462..21882486 (25 bp)
GACTCTGCACAGGTTCCTGTATAAT
LOC_Os01g38380
OsAffx.23554.3.S1_at--1019--3291Chr01:21882455..21882479 (25 bp)
CACAGGTTCCTGTATAATAACTTCA
LOC_Os01g38380
OsAffx.23554.3.S1_at--49--7911Chr01:21882451..21882475 (25 bp)
GGTTCCTGTATAATAACTTCAGATT
LOC_Os01g38380
OsAffx.23554.3.S1_at--559--6851Chr01:21882444..21882468 (25 bp)
GTATAATAACTTCAGATTCTTCCTC
LOC_Os01g38380
OsAffx.23554.3.S1_at--673--9751Chr01:21882441..21882465 (25 bp)
TAATAACTTCAGATTCTTCCTCATG
LOC_Os01g38380
Target Sequence 
AAGCTGGCGGTGACTCTGCACAGGTTCCTGTATAATAACTTCAGATTCTTCCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23554.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis