Browse Element(s) Details


OsAffx.23554.3.S1_s_at

Description tigr:9629.m03642
TID=OsAffx.23554.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3838011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23554.3.S1_s_at--764--10031Chr01:21882952..21882976 (25 bp)
TAGACCTTGTTCGTCACTTCCAGAT
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--190--1291Chr01:21882931..21882955 (25 bp)
AGATCGGCTCTCGTCCAACAAAGGT
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--1017--7791Chr01:21882909..21882933 (25 bp)
GGTCGAACCCATTTCAGAACCTCGG
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--444--9451Chr01:21882888..21882912 (25 bp)
TCGGCTGGCCATTTCGGCTATAAAG
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--1066--2691Chr01:21882866..21882890 (25 bp)
AAGCTAGCTGAGAACGGCATCCACT
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--986--8271Chr01:21882851..21882875 (25 bp)
GGCATCCACTTTGAGCCGAGTGAGA
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--402--3971Chr01:21882821..21882845 (25 bp)
CGGTTCGGCGACATCACAGTAGTGA
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--383--2371Chr01:21882794..21882818 (25 bp)
AAACGGTTCCTCTTCGGCAAGATAT
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--983--5171Chr01:21882778..21882802 (25 bp)
GCAAGATATCTCTACCTCCATTGTT
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--203--8371Chr01:21882677..21882701 (25 bp)
GGCGTGGGCTCTTATATGCATATTA
LOC_Os01g38380
OsAffx.23554.3.S1_s_at--35--10371Chr01:21882559..21882583 (25 bp)
TTTTTAAGTCCATTACCCAGCACGT
LOC_Os01g38380
Target Sequence 
TAGACCTTGTTCGTCACTTCCAGATCGGCTCTCGTCCAACAAAGGTCGAACCCATTTCAGAACCTCGGCTGGCCATTTCG
GCTATAAAGCTAGCTGAGAACGGCATCCACTTTGAGCCGAGTGAGACGACGCGGTTCGGCGACATCACAGTAGTGAAGAA
ACGGTTCCTCTTCGGCAAGATATCTCTACCTCCATTGTTCCTTGGCCGGAGGACTATGTGCTGGTTGGCAAACATGGTGG
CATTTGAGCGGACGAAGGCAGGGAGATGCGATTGTGGCGTGGGCTCTTATATGCATATTATTGCAGGGCTCATGAATAGT
GAAGAAGACGTGCGCGAGCTGCGCACCAAGGGGATACTATATCCGGTGTTTAGCGACAAGCAAACGCTCAAATTTTTTAA
GTCCATTACCCAGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23554.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis