Browse Element(s) Details


OsAffx.23583.1.S1_at

Description tigr:9629.m03774
TID=OsAffx.23583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3962011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39580Os.57500.1.S1_x_at3/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.57500.1.S1_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580OsAffx.940.1.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.51127.2.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39590OsAffx.23582.1.S1_x_at11/111+22659374..22660089hypothetical protein
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23583.1.S1_at--763--10171Chr01:22678370..22678394 (25 bp)
TATACCCCAGGAATATTTTTGCGAC
LOC_Os01g39620
OsAffx.23583.1.S1_at--350--4611Chr01:22678350..22678374 (25 bp)
GCGACCAAAAGGAAAACTCGTCAGA
LOC_Os01g39620
OsAffx.23583.1.S1_at--579--2391Chr01:22678337..22678361 (25 bp)
AAACTCGTCAGATAGTATGTTCACT
LOC_Os01g39620
OsAffx.23583.1.S1_at--1103--6491Chr01:22678327..22678351 (25 bp)
GATAGTATGTTCACTGATCCATTCG
LOC_Os01g39620
OsAffx.23583.1.S1_at--669--1191Chr01:22678324..22678348 (25 bp)
AGTATGTTCACTGATCCATTCGGAA
LOC_Os01g39620
OsAffx.23583.1.S1_at--1001--6731Chr01:22678319..22678343 (25 bp)
GTTCACTGATCCATTCGGAACAGAT
LOC_Os01g39620
OsAffx.23583.1.S1_at--478--6371Chr01:22678312..22678336 (25 bp)
GATCCATTCGGAACAGATGGATTTC
LOC_Os01g39620
OsAffx.23583.1.S1_at--410--6251Chr01:22678297..22678321 (25 bp)
GATGGATTTCTTGATCAATAGTGAA
LOC_Os01g39620
OsAffx.23583.1.S1_at--786--2071Chr01:22678272..22678296 (25 bp)
ACATTACAAAGTTCAGAGCAAGCAG
LOC_Os01g39620
OsAffx.23583.1.S1_at--817--5951Chr01:22678257..22678281 (25 bp)
GAGCAAGCAGTAGAATTTCCTCAAA
LOC_Os01g39620
OsAffx.23583.1.S1_at--32--10011Chr01:22678247..22678271 (25 bp)
TAGAATTTCCTCAAAGGGCTCCTTT
LOC_Os01g39620
Target Sequence 
TATACCCCAGGAATATTTTTGCGACCAAAAGGAAAACTCGTCAGATAGTATGTTCACTGATCCATTCGGAACAGATGGAT
TTCTTGATCAATAGTGAAACATTACAAAGTTCAGAGCAAGCAGTAGAATTTCCTCAAAGGGCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis