Browse Element(s) Details


OsAffx.23595.1.S1_at

Description tigr:9629.m03824
TID=OsAffx.23595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4009411/11Protein phosphatase 2C ABI2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23595.1.S1_at--24--5251Chr01:22950102..22950126 (25 bp)
GAATAACAGTCACTGTTCATTCTGC
LOC_Os01g40094
OsAffx.23595.1.S1_at--631--8791Chr01:22950115..22950139 (25 bp)
TGTTCATTCTGCTCTTACATCAGCC
LOC_Os01g40094
OsAffx.23595.1.S1_at--452--10591Chr01:22950121..22950145 (25 bp)
TTCTGCTCTTACATCAGCCAATAGC
LOC_Os01g40094
OsAffx.23595.1.S1_at--1118--3371Chr01:22950135..22950159 (25 bp)
CAGCCAATAGCTTTTATCATGCAAT
LOC_Os01g40094
OsAffx.23595.1.S1_at--1156--3511Chr01:22950152..22950176 (25 bp)
CATGCAATATTTTTCTCTGATCAAG
LOC_Os01g40094
OsAffx.23595.1.S1_at--311--9511Chr01:22950165..22950189 (25 bp)
TCTCTGATCAAGAATACACGATACA
LOC_Os01g40094
OsAffx.23595.1.S1_at--733--6471Chr01:22950184..22950208 (25 bp)
GATACAAAAACATTTCAGCCTCACT
LOC_Os01g40094
OsAffx.23595.1.S1_at--780--2411Chr01:22950189..22950213 (25 bp)
AAAAACATTTCAGCCTCACTTCCTG
LOC_Os01g40094
OsAffx.23595.1.S1_at--56--2071Chr01:22950206..22950230 (25 bp)
ACTTCCTGCGCTGTGTCTGTTACAG
LOC_Os01g40094
OsAffx.23595.1.S1_at--611--4571Chr01:22950213..22950237 (25 bp)
GCGCTGTGTCTGTTACAGGTGACAG
LOC_Os01g40094
OsAffx.23595.1.S1_at--819--10451Chr01:22950516..22950540 (25 bp)
TTAGCGTCATTGTCGTTGACCTCAA
LOC_Os01g40094
Target Sequence 
GAATAACAGTCACTGTTCATTCTGCTCTTACATCAGCCAATAGCTTTTATCATGCAATATTTTTCTCTGATCAAGAATAC
ACGATACAAAAACATTTCAGCCTCACTTCCTGCGCTGTGTCTGTTACAGGTGACAGATATCTCAAGCCATGGATAATTCC
AGTCCCCGAGATCACTATTGTTCCTCGAGCAAAGGATGACGAATGTCTCGTTCTTGCTAGTGATGGTCTCTGGGACGTCA
TGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGAATACTGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCA
GCCCCGCGAAGCGGTGACTCGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGGG
GAGCAAGGACAACATTAGCGTCATTGTCGTTGACCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis