Browse Element(s) Details


OsAffx.23603.2.S1_at

Description tigr:9629.m03853
TID=OsAffx.23603.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g403706/11SIT4 phosphatase-associated family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23603.2.S1_at--745--3371NONE
CAGCGAACCACGGATGCGACGGATT
NONE
OsAffx.23603.2.S1_at--587--1631NONE
AGCGAACCACGGATGCGACGGATTT
NONE
OsAffx.23603.2.S1_at--725--4591NONE
GCGAACCACGGATGCGACGGATTTT
NONE
OsAffx.23603.2.S1_at--666--4111NONE
CGAACCACGGATGCGACGGATTTTG
NONE
OsAffx.23603.2.S1_at--745--2631Chr08:6292073..6292093 (21 bp)
AACCACGGATGCGACGGATTTTGCG
NONE
OsAffx.23603.2.S1_at--951--4352Chr11:14060751..14060771 (21 bp)
CCACGGATGCGACGGATTTTGCGAA
NONE
OsAffx.23603.2.S1_at--470--612Chr11:14060753..14060777 (25 bp)
ATGCGACGGATTTTGCGAAGGAAGC
NONE
OsAffx.23603.2.S1_at--177--1851Chr01:23118810..23118834 (25 bp)
ACGCACACGGCTCGGCTCTGTACGG
LOC_Os01g40370
OsAffx.23603.2.S1_at--946--2171Chr01:23118814..23118838 (25 bp)
ACACGGCTCGGCTCTGTACGGCTCG
LOC_Os01g40370
OsAffx.23603.2.S1_at--119--4812Chr11:14060800..14060824 (25 bp)
GCTCTGTACGGCTCGGCTGGAGGAG
NONE
OsAffx.23603.2.S1_at--266--8571Chr01:23119918..23119942 (25 bp)
TGGATTATGATGTGGTAGCTCTTAC
LOC_Os01g40370
Target Sequence 
CAGCGAACCACGGATGCGACGGATTTTGCGAAGGAAGCGGCGGCGCACGCACACGGCTCGGCTCTGTACGGCTCGGCTGG
AGGAGGAAGAAGGCGCCCAACATCACTTCATGACTGTGGTAGGGATAGTGATGATGACGACTTCCGAGACATGGATTATG
ATGTGGTAGCTCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23603.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis