Browse Element(s) Details


OsAffx.23672.1.S1_at

Description tigr:9629.m04363
TID=OsAffx.23672.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4565011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23672.1.S1_at--810--7071Chr01:26256010..26256034 (25 bp)
GTCAACCACAACGACCAGGCGATTG
LOC_Os01g45650
OsAffx.23672.1.S1_at--1099--6591Chr01:26255990..26256014 (25 bp)
GATTGGAACCCACTCGTTCAAGTTG
LOC_Os01g45650
OsAffx.23672.1.S1_at--325--9171Chr01:26255875..26255899 (25 bp)
TGCCCCATCTACAGGATTTGCTTAT
LOC_Os01g45650
OsAffx.23672.1.S1_at--1155--991Chr01:26255863..26255887 (25 bp)
AGGATTTGCTTATCCGACGGCGACT
LOC_Os01g45650
OsAffx.23672.1.S1_at--76--4031Chr01:26255813..26255837 (25 bp)
CGTCTACTGGTTGTGCTGCGAATAC
LOC_Os01g45650
OsAffx.23672.1.S1_at--772--5231Chr01:26255794..26255818 (25 bp)
GAATACTCGGGTTACAGCATCCTCA
LOC_Os01g45650
OsAffx.23672.1.S1_at--867--1531Chr01:26255779..26255803 (25 bp)
AGCATCCTCAGCCTAAAGCGACGAG
LOC_Os01g45650
OsAffx.23672.1.S1_at--1087--7351Chr01:26255725..26255749 (25 bp)
GTGAACCTCCCGGAGTCGTGCAAAT
LOC_Os01g45650
OsAffx.23672.1.S1_at--91--5391Chr01:26255607..26255631 (25 bp)
GAAGCGACCGCATTCTCGTGTGGGT
LOC_Os01g45650
OsAffx.23672.1.S1_at--1039--7631Chr01:26255541..26255565 (25 bp)
GGGAGCTGCGTCACGTTATCCGCGA
LOC_Os01g45650
OsAffx.23672.1.S1_at--595--6771Chr01:26255527..26255551 (25 bp)
GTTATCCGCGAGAATAGCATCAGGC
LOC_Os01g45650
Target Sequence 
GTCAACCACAACGACCAGGCGATTGGAACCCACTCGTTCAAGTTGCTCGCCGCGCAGCTGCTAGTGAGCCCTGCCAGGAC
GCTCATCTTCCAAGTCTTCTCCTCCGACGAGCGCGAGTGGGGCACTCCCGTTGCCTGCCCCATCTACAGGATTTGCTTAT
CCGACGGCGACTCCAATGTTGTCGTCCTGCGCGGCGCCGTCTACTGGTTGTGCTGCGAATACTCGGGTTACAGCATCCTC
AGCCTAAAGCGACGAGGCGACGGCGGGGAGCCGAAGGCTTCACTAGTGAACCTCCCGGAGTCGTGCAAATCCGGGATGCA
CAACATGTGCCTCGCGCTATCGCCGGCCGCGGCGGCGGACGACGGCACGAGCAACGCAGCATTGCTGAGCGTGGTCGTCC
ACGGAAGCGACCGCATTCTCGTGTGGGTCCGCAGACTCCGCACCACCGCGCGAGGGAGGTCACGCCGCTGGGAGCTGCGT
CACGTTATCCGCGAGAATAGCATCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis