Browse Element(s) Details


OsAffx.23675.1.S1_at

Description gb:NM_192306.1
DB_XREF= gi:34911695
GEN=P0707D10.12
TID=OsAffx.23675.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0707D10.12 (P0707D10.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4571010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23675.1.S1_at--279--1871Chr01:26279364..26279388 (25 bp)
ACGAGCTGGGCGAGCGAGTGCGTCA
NONE
OsAffx.23675.1.S1_at--97--1872Chr01:26279544..26279568 (25 bp)
ACGACGATGCGAACCTGACGATGAC
LOC_Os01g45710
OsAffx.23675.1.S1_at--482--4051Chr01:26279548..26279572 (25 bp)
CGATGCGAACCTGACGATGACGACG
LOC_Os01g45710
OsAffx.23675.1.S1_at--55--2931Chr01:26280674..26280698 (25 bp)
AAGGAGCTGTCAAGACGATCCGTAA
LOC_Os01g45710
OsAffx.23675.1.S1_at--595--1871Chr01:26280688..26280712 (25 bp)
ACGATCCGTAAAGTGCAGCGACGCA
LOC_Os01g45710
OsAffx.23675.1.S1_at--330--3391Chr01:26280703..26280727 (25 bp)
CAGCGACGCAGATGGCGTTGCGATT
LOC_Os01g45710
OsAffx.23675.1.S1_at--30--2811Chr01:26280735..26280759 (25 bp)
AAGATAGCATTGTGATTAGCAGCGA
LOC_Os01g45710
OsAffx.23675.1.S1_at--320--10451Chr01:26280750..26280774 (25 bp)
TTAGCAGCGAAGATCGCTCGCCCGT
LOC_Os01g45710
OsAffx.23675.1.S1_at--613--3991Chr01:26280828..26280852 (25 bp)
CGTGGCCATGCATCATGACGGCAGT
LOC_Os01g45710
OsAffx.23675.1.S1_at--912--5011Chr01:26280848..26280872 (25 bp)
GCAGTGGCGCTTGGCAACAAGGCTA
LOC_Os01g45710
OsAffx.23675.1.S1_at--723--2451Chr01:26280863..26280887 (25 bp)
AACAAGGCTAGTGGCAATGAGCTCC
LOC_Os01g45710
Target Sequence 
ACGAGCTGGGCGAGCGAGTGCGTCACCCCGGGCGAGCGAGGGAGGGAGGCGATCGCCCGGGCGAGCTGGTCGGCGCGGGA
TGCAGGTCGGCGGCCGGTGCCGGCGCGTCAACGGGAAGAGGGACGATGGCGACGGGAGGTGGCGACGAGCTTGGAGACGC
TGGCGGAGACAATGGCGACGACGACGATGCGAACCTGACGATGACGACGACGACGGTGCGGGTGGCGATAGCCGCGTCGG
CGGGAGGCGGCAGCGGAGCCTATAGCCGGCGGGAGGCGGCCGCCGGCGGGAAGAGGCGGCGGTGGCACAGTGGAAAGAAG
TTTGATGACATGATCGAGAAGGAGCTGTCAAGACGATCCGTAAAGTGCAGCGACGCAGATGGCGTTGCGATTGGCGAAGA
AGATAGCATTGTGATTAGCAGCGAAGATCGCTCGCCCGTCCACCATCATCCCTGGCGAGCCTTCCCCAGCAACGTCATCA
TCATCACCGCGGCGTGGCCATGCATCATGACGGCAGTGGCGCTTGGCAACAAGGCTAGTGGCAATGAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis