Browse Element(s) Details


OsAffx.23760.1.S1_at

Description tigr:9629.m05062
TID=OsAffx.23760.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5219011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23760.1.S1_at--403--7691Chr01:30343223..30343247 (25 bp)
GGGTCACCGGGTTCTCGAACGCCAG
LOC_Os01g52190
OsAffx.23760.1.S1_at--193--4431Chr01:30343143..30343167 (25 bp)
GCCATATCCCGGTTCGCCAGGGACG
LOC_Os01g52190
OsAffx.23760.1.S1_at--1089--9251Chr01:30343137..30343161 (25 bp)
TCCCGGTTCGCCAGGGACGCGTACG
LOC_Os01g52190
OsAffx.23760.1.S1_at--705--1831Chr01:30343034..30343058 (25 bp)
ACGCGTGCTACGACCTCCGCGGGAG
LOC_Os01g52190
OsAffx.23760.1.S1_at--157--3871Chr01:30342990..30343014 (25 bp)
CTGATCGTGCTGCACTTCGCCGGCG
LOC_Os01g52190
OsAffx.23760.1.S1_at--1--1871Chr01:30342863..30342887 (25 bp)
ACGACGGGCTCAGCGTGATCGGTAA
LOC_Os01g52190
OsAffx.23760.1.S1_at--634--8311Chr01:30342857..30342881 (25 bp)
GGCTCAGCGTGATCGGTAACGTGCA
LOC_Os01g52190
OsAffx.23760.1.S1_at--669--7391Chr01:30342849..30342873 (25 bp)
GTGATCGGTAACGTGCAGCAGCAAG
LOC_Os01g52190
OsAffx.23760.1.S1_at--1048--1511Chr01:30342833..30342857 (25 bp)
AGCAGCAAGGATTCCGGGTCGTGTT
LOC_Os01g52190
OsAffx.23760.1.S1_at--234--3191Chr01:30342828..30342852 (25 bp)
CAAGGATTCCGGGTCGTGTTTGACG
LOC_Os01g52190
OsAffx.23760.1.S1_at--519--9271Chr01:30342821..30342845 (25 bp)
TCCGGGTCGTGTTTGACGTGGAGAA
LOC_Os01g52190
Target Sequence 
GGGTCACCGGGTTCTCGAACGCCAGCCTCGCGCTGGACACGGCGACGGGGCGGGGCGGCGTCGTCGTGGACTCCGGCACG
GCCATATCCCGGTTCGCCAGGGACGCGTACGCGGCGCTGCGCGACGCCTTCGACGCGCGTGCGCGCGCGGCCGGGATGCG
GAGGCTGGCGGGCGAGCACTCGGTGTTCGACGCGTGCTACGACCTCCGCGGGAGGCCGGCGGCGAGCGCGCCGCTGATCG
TGCTGCACTTCGCCGGCGGCGCGGACATGGCGCTGCCACCGGAGAACTACTTCCTCCCCGTGGACGGCGGGAGGCGGCGG
GCGGCGTCGTACCGCCGCTGCCTGGGGTTCGAGGCGGCGGACGACGGGCTCAGCGTGATCGGTAACGTGCAGCAGCAAGG
ATTCCGGGTCGTGTTTGACGTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis