Browse Element(s) Details


OsAffx.23783.1.S1_at

Description tigr:9629.m05255
TID=OsAffx.23783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5394010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23783.1.S1_at--819--6791Chr01:31344380..31344404 (25 bp)
GTTTTGGGTTCAGGCCCGCGAAGCA
LOC_Os01g53940
OsAffx.23783.1.S1_at--11--2731NONE
AAGCAGCAGGGACAGACCTTCTCAA
NONE
OsAffx.23783.1.S1_at--594--5651Chr01:31343077..31343101 (25 bp)
GACAGACCTTCTCAAGTTGCTCTGG
LOC_Os01g53940
OsAffx.23783.1.S1_at--679--951Chr01:31343043..31343067 (25 bp)
AGGACAAGGTGGCAGCATCATCCAG
LOC_Os01g53940
OsAffx.23783.1.S1_at--412--4971Chr01:31343034..31343053 (20 bp)
GCATCATCCAGTTCATTGGTTTCAG
LOC_Os01g53940
OsAffx.23783.1.S1_at--634--31Chr01:31342921..31342942 (22 bp)
ATTGGTTTCAGGTACACCACCGTTG
LOC_Os01g53940
OsAffx.23783.1.S1_at--101--2151Chr01:31342908..31342932 (25 bp)
ACACCACCGTTGAGAGTGGATCTCA
LOC_Os01g53940
OsAffx.23783.1.S1_at--769--931Chr01:31342871..31342895 (25 bp)
AGGCAAAGAGATATGCTGTCTTTCA
LOC_Os01g53940
OsAffx.23783.1.S1_at--424--4871Chr01:31342820..31342844 (25 bp)
GCTATAAAAGTTTTGATTCCTCGTT
LOC_Os01g53940
OsAffx.23783.1.S1_at--296--8831Chr01:31342807..31342831 (25 bp)
TGATTCCTCGTTTGGTAATTATCTT
LOC_Os01g53940
OsAffx.23783.1.S1_at--816--10851Chr01:31342796..31342820 (25 bp)
TTGGTAATTATCTTGTCCCCGTCAT
LOC_Os01g53940
Target Sequence 
GTTTTGGGTTCAGGCCCGCGAAGCAGCAGGGACAGACCTTCTCAAGTTGCTCTGGACAGGGACAAGGACAAGGTGGCAGC
ATCATCCAGTTCATTGGTTTCAGGTACACCACCGTTGAGAGTGGATCTCAACAAAGTTAGAGAGGCAAAGAGATATGCTG
TCTTTCAAGCACAGCATGAGGGGTGCCTTGGAAGCTATAAAAGTTTTGATTCCTCGTTTGGTAATTATCTTGTCCCCGTC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis