Browse Element(s) Details


OsAffx.23809.2.S1_x_at

Description gb:NM_191426.1
DB_XREF= gi:34909935
GEN=P0665A11.28
TID=OsAffx.23809.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665A11.28 (P0665A11.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g565002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23809.2.S1_x_at--771--8371Chr01:32906068..32906092 (25 bp)
GGCGATTGCCTGGACAGGCGCCCAT
NONE
OsAffx.23809.2.S1_x_at--914--851Chr01:32906053..32906077 (25 bp)
AGGCGCCCATGTCTACGGTACTTTC
NONE
OsAffx.23809.2.S1_x_at--907--7831Chr01:32906037..32906061 (25 bp)
GGTACTTTCTACTCGCGACCTTCCT
NONE
OsAffx.23809.2.S1_x_at--377--9331Chr01:32906013..32906037 (25 bp)
TCGCCACTCTCTTATTATCGCTCAT
NONE
OsAffx.23809.2.S1_x_at--447--2011Chr01:32906008..32906032 (25 bp)
ACTCTCTTATTATCGCTCATGGCGT
NONE
OsAffx.23809.2.S1_x_at--917--10391Chr01:32906002..32906026 (25 bp)
TTATTATCGCTCATGGCGTACGGGC
NONE
OsAffx.23809.2.S1_x_at--418--4012Chr01:32906827..32906850 (24 bp)
CGTACGGGCAGTGGAACAGCATGTT
NONE
OsAffx.23809.2.S1_x_at--456--8171Chr01:32905974..32905998 (25 bp)
GGAACAGCATGTTCCGCGACCACGA
NONE
OsAffx.23809.2.S1_x_at--498--1212Chr01:32905872..32905896 (25 bp)
AGTTCAGGGTGACGCTCGGGACGGC
NONE
OsAffx.23809.2.S1_x_at--571--4252Chr01:32905821..32905845 (25 bp)
CCGTGACCGTGCTGTACTCGGGCGT
NONE
OsAffx.23809.2.S1_x_at--914--3771Chr01:32905635..32905659 (25 bp)
CTCGACGTCGACGTGAAGATCTTCG
NONE
Target Sequence 
GGCGATTGCCTGGACAGGCGCCCATGTCTACGGTACTTTCTACTCGCGACCTTCCTCGCCACTCTCTTATTATCGCTCAT
GGCGTACGGGCAGTGGAACAGCATGTTCCGCGACCACGACCTCGACGCCTTCTCCGTGCGCCTCGCCGGCTACGAGGGCA
TCGACCTGGGCAGGCCGGCCGCCACGGTGTCGCCGGAGTTCAGGGTGACGCTCGGGACGGCGAACGGCGCGTGCGTGGAC
CGCGCGGCCGTGACCGTGCTGTACTCGGGCGTGGCGCTGGGTTGGGCGCGCGCGGAGCCGCGCGACTGCGCGGCGGGGCG
CTTGGAGAGGGACGTGGAGGTGGTGGCGCGGGGCCAGGGAGTGGGGCTGTCGGATCGCCTCCGCGCGCGCATGGCGTCGG
AATGGCGGCGCTCGTCGATCGGGCGCGCTGGAGCTCGACGTCGACGTGAAGATCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23809.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis