Browse Element(s) Details


OsAffx.23842.1.S1_at

Description tigr:9629.m05741
TID=OsAffx.23842.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5851011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23842.1.S1_at--743--8191Chr01:34142894..34142918 (25 bp)
GGAAGTCTTGCAGAGCATGCTCATG
LOC_Os01g58510
OsAffx.23842.1.S1_at--369--8711Chr01:34142947..34142971 (25 bp)
TGTCCATGGATGGTGGCAACGGCCT
LOC_Os01g58510
OsAffx.23842.1.S1_at--774--7811Chr01:34143016..34143040 (25 bp)
GGTACCTCGTAGTATTCGACGACGT
LOC_Os01g58510
OsAffx.23842.1.S1_at--363--9331Chr01:34143121..34143145 (25 bp)
TCGCCTTCGGGTTGCCCAAAGAGAG
LOC_Os01g58510
OsAffx.23842.1.S1_at--810--8191Chr01:34143202..34143226 (25 bp)
GGAAGAGCAGCTTGCACCGTGTGCA
LOC_Os01g58510
OsAffx.23842.1.S1_at--1082--1591Chr01:34143246..34143270 (25 bp)
AGCTGCTGGGCAATTTTCATGGATG
LOC_Os01g58510
OsAffx.23842.1.S1_at--28--10351Chr01:34143273..34143297 (25 bp)
TTTTCCAAGGAAAGACGGCCGGCTG
LOC_Os01g58510
OsAffx.23842.1.S1_at--36--5771Chr01:34143297..34143321 (25 bp)
GACGTCACCACTGTCAACAACATGA
LOC_Os01g58510
OsAffx.23842.1.S1_at--720--6431Chr01:34143329..34143353 (25 bp)
GATCATTGATACCTGCGGTGGGCTC
LOC_Os01g58510
OsAffx.23842.1.S1_at--719--1411Chr01:34143367..34143391 (25 bp)
AGACACTGGGAGACATCTTTGCAAG
LOC_Os01g58510
OsAffx.23842.1.S1_at--136--10751Chr01:34143385..34143409 (25 bp)
TTGCAAGGAGTTTATCATCGCCCGC
LOC_Os01g58510
Target Sequence 
GGAAGTCTTGCAGAGCATGCTCATGGCTCTCGGCCTCGAGGAGGAGGTCATCTTGTCCATGGATGGTGGCAACGGCCTGG
GAGAGATGGTGTTTGCAGTCCATGAGCAGCTCAAGGGGAAGAGGTACCTCGTAGTATTCGACGACGTCTGGAACGTCGAC
GGCTGGTACGCCGACGTGGTAGGCCGCCGGAATGCCTCGCCCACCGGCGAGGAGTGGGGAGAGCGCCTCGCCTTCGGGTT
GCCCAAAGAGAGAGGCGGGGTGGTGGTCGTCACCAGCCGGCTGGAGCAAGCGGCAGAGACGATGGTCGGGAAGAGCAGCT
TGCACCGTGTGCAGCCATTGGCCGACGGCGAGAGCTGCTGGGCAATTTTCATGGATGCATTTTCCAAGGAAAGACGGCCG
GCTGACGTCACCACTGTCAACAACATGAAAGATGAGATCATTGATACCTGCGGTGGGCTCCCGTCAGCGGCCAAGACACT
GGGAGACATCTTTGCAAGGAGTTTATCATCGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis