Browse Element(s) Details


OsAffx.23842.2.S1_x_at

Description tigr:9629.m07116
TID=OsAffx.23842.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71910Os.45976.1.S1_x_at3/111+41992265..41995947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71930Os.52384.1.A1_at11/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71930OsAffx.2448.1.S1_at1/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71940OsAffx.11821.1.S1_at11/111+42008766..42011226hypothetical protein
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23842.2.S1_x_at--898--7452Chr07:2942268..2942292 (25 bp)
GTGTCTGTACGAGCTCAATGACCTG
NONE
OsAffx.23842.2.S1_x_at--966--1571Chr01:42016313..42016337 (25 bp)
AGCTCAATGACCTGCTCGCCGAGTG
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--705--4891Chr01:42016286..42016310 (25 bp)
GCTTGCTCGCCAACCGGACGAACAT
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--910--2591Chr01:42016275..42016299 (25 bp)
AACCGGACGAACATGCGGCCGGGCT
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--556--7492Chr07:2942363..2942387 (25 bp)
GTGGCGTTCCAACAGCTTGAAGAAG
NONE
OsAffx.23842.2.S1_x_at--308--3251Chr01:42016192..42016216 (25 bp)
CAAGCGCCGAGTTCTGCGGAGCGTC
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--236--8791Chr01:42015935..42015959 (25 bp)
TGTTCAACAGCCTGCGGGCAATGAG
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--1004--6751Chr01:42015934..42015958 (25 bp)
GTTCAACAGCCTGCGGGCAATGAGG
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--576--3271Chr01:42015931..42015955 (25 bp)
CAACAGCCTGCGGGCAATGAGGAGA
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--27--3391Chr01:42015928..42015952 (25 bp)
CAGCCTGCGGGCAATGAGGAGAGGG
LOC_Os01g71950
OsAffx.23842.2.S1_x_at--202--7671Chr01:42015271..42015803 (25 bp)
GGGATTGCAATGACAGGCGCTGGGA
LOC_Os01g71950
Target Sequence 
GTGTCTGTACGAGCTCAATGACCTGCTCGCCGAGTGCCGCTTGCTCGCCAACCGGACGAACATGCGGCCGGGCTGCTTCT
CCCCGTCCGAAGCGTGGCGTTCCAACAGCTTGAAGAAGAGGGTGATCGCCGTCAAGCGCCGAGTTCTGCGGAGCGTCGAG
AGCGATTCCAGCGGCGTTGGCGGCAACGCCGCAGCCTTGGAGGAGGAGGACAGTGCCGCCACGGGCTTCAGCCGGTGGAC
CTCCTCCTGGATCGAAGAGGGCACCGTCCAGGGGTTCGACCAGCAACTCGCCGAGCTGGAATCCGTGGCGGAGTGCGGCG
CCGGAGGACTTACCGGCGTCGGCATCGTCGGCATGGGTGGCGTCGGGAAGACCGGGCTCGCGCAGCTCGTGTTCAACAGC
CTGCGGGCAATGAGGAGAGGGGCGGCGGCCGCCGGCGTTAGGCCAAGGGGGCAGGAGTGGAGGAGGCCGCGCCTCTCCAC
GGTCCTTATCTCCGCCGGCGAGAGGAGGGAGCAGAGGAGAGAGATGAAGAGAGGAGGAAGAGGAGGGGATTGCAATGACA
GGCGCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23842.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis