Browse Element(s) Details


OsAffx.2388.1.S1_at

Description tigr:9629.m06166
TID=OsAffx.2388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNB-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6244011/11RNB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2388.1.S1_at--726--10131Chr01:36466127..36466151 (25 bp)
TATGCAAACTGCCTCACGATCTGAA
LOC_Os01g62440
OsAffx.2388.1.S1_at--145--5051Chr01:36466070..36466094 (25 bp)
GCAGCAACTTTGTGCACCTAGGAAA
LOC_Os01g62440
OsAffx.2388.1.S1_at--1105--291Chr01:36466044..36466068 (25 bp)
ATAGCTTTGCTATTTGGTCTTGCCA
LOC_Os01g62440
OsAffx.2388.1.S1_at--1079--8051Chr01:36466018..36466042 (25 bp)
GGAGCAGAATTGCACCTGTCGTTTC
LOC_Os01g62440
OsAffx.2388.1.S1_at--401--7371Chr01:36465945..36465969 (25 bp)
GTGACTTGTTACCTATGCACCTGAG
LOC_Os01g62440
OsAffx.2388.1.S1_at--1081--5991Chr01:36465903..36465927 (25 bp)
GAGACCATCTTCTTCAGTTTACAAC
LOC_Os01g62440
OsAffx.2388.1.S1_at--1003--2491Chr01:36465811..36465835 (25 bp)
AACAGGTACCAGTAGTCTAACTTGT
LOC_Os01g62440
OsAffx.2388.1.S1_at--966--7011Chr01:36465788..36465812 (25 bp)
GTACATCCATTTTGAGTCCGAGACA
LOC_Os01g62440
OsAffx.2388.1.S1_at--119--8791Chr01:36465712..36465736 (25 bp)
TGTTCAGGTTCAAACGCGGACTTTT
LOC_Os01g62440
OsAffx.2388.1.S1_at--84--6631Chr01:36465672..36465696 (25 bp)
GTTGGATGCATTTTCTACTGTTATG
LOC_Os01g62440
OsAffx.2388.1.S1_at--425--8471Chr01:36465634..36465658 (25 bp)
TGGCCCGCGCAGATTATACGGCTAG
LOC_Os01g62440
Target Sequence 
TATGCAAACTGCCTCACGATCTGAACTTAGAACCTTGGACAATACTACAGTACTACTGCAGCAACTTTGTGCACCTAGGA
AACATAGCTTTGCTATTTGGTCTTGCCAAGGAGCAGAATTGCACCTGTCGTTTCCTCTATAGTGAAGGTATGAAGAAATT
GATTCTGATGTAAATGCAAGAGGTGACTTGTTACCTATGCACCTGAGGCAACGATCTCCACTTCGAGACCATCTTCTTCA
GTTTACAACTACGAAGTCCATATTGCTTGGACCAAACGAGTACAGTTCAGGGGTATGGTCACATTTTGAATCTTTTAACA
GGTACCAGTAGTCTAACTTGTACATCCATTTTGAGTCCGAGACAATCAGGTGAAGGAACAGATCTGGTCATTTGAGTTAA
GTAGGACCTTTGCTATGTTCAGGTTCAAACGCGGACTTTTGGGGATAACTGTATAGTTGGATGCATTTTCTACTGTTATG
TTAACTAGCATGGTGGCCCGCGCAGATTATACGGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis