Browse Element(s) Details


OsAffx.23905.1.S1_at

Description tigr:9629.m06297
TID=OsAffx.23905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6368011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63640Os.28943.1.S1_x_at4/111+37237251..37240295retrotransposon protein, putative, unclassified
LOC_Os01g63650NANA1+37241109..37243837retrotransposon protein, putative, unclassified
LOC_Os01g63660OsAffx.22848.4.S1_x_at3/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63660OsAffx.22848.4.S1_at2/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63670OsAffx.23904.1.S1_at10/111+37260474..37261328hypothetical protein
LOC_Os01g63680OsAffx.23905.1.S1_at11/111+37263833..37266210Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63690Os.6321.1.S1_at11/111+37269538..37271426Nematode-resistance protein, putative, expressed
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed
LOC_Os01g63720OsAffx.11714.1.S1_at11/111+37287609..37288015hypothetical protein
LOC_Os01g63730OsAffx.2396.1.S1_at11/111+37291178..37291577hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23905.1.S1_at--507--3471Chr01:37265627..37265651 (25 bp)
CAGGGCAACCTGCACTATGGGATGC
LOC_Os01g63680
OsAffx.23905.1.S1_at--39--5171Chr01:37265631..37265655 (25 bp)
GCAACCTGCACTATGGGATGCATGT
LOC_Os01g63680
OsAffx.23905.1.S1_at--230--3331Chr01:37265639..37265663 (25 bp)
CACTATGGGATGCATGTGCCGGCAC
LOC_Os01g63680
OsAffx.23905.1.S1_at--723--10111Chr01:37265642..37265666 (25 bp)
TATGGGATGCATGTGCCGGCACCGC
LOC_Os01g63680
OsAffx.23905.1.S1_at--742--1511Chr01:37265682..37265706 (25 bp)
AGCAGCAAGGGATTAGCGTTGATCA
LOC_Os01g63680
OsAffx.23905.1.S1_at--716--6551Chr01:37265692..37265716 (25 bp)
GATTAGCGTTGATCAGGGCCTGCAT
LOC_Os01g63680
OsAffx.23905.1.S1_at--1--10011Chr01:37265695..37265719 (25 bp)
TAGCGTTGATCAGGGCCTGCATTCT
LOC_Os01g63680
OsAffx.23905.1.S1_at--112--7571Chr01:37265707..37265731 (25 bp)
GGGCCTGCATTCTTCTTGCCTGAGC
LOC_Os01g63680
OsAffx.23905.1.S1_at--119--9071Chr01:37265712..37265736 (25 bp)
TGCATTCTTCTTGCCTGAGCCTGTA
LOC_Os01g63680
OsAffx.23905.1.S1_at--674--111Chr01:37265715..37265739 (25 bp)
ATTCTTCTTGCCTGAGCCTGTACCA
LOC_Os01g63680
OsAffx.23905.1.S1_at--181--3951Chr01:37265760..37265784 (25 bp)
CGGTTAGCCTGGATTTCGGTTGCCA
LOC_Os01g63680
Target Sequence 
CAGGGCAACCTGCACTATGGGATGCATGTGCCGGCACCGCCGGTGCAGCAGCAGCAGCAGCAAGGGATTAGCGTTGATCA
GGGCCTGCATTCTTCTTGCCTGAGCCTGTACCACCCGTTCCCGGGAACCCACCCGGTTAGCCTGGATTTCGGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis