Browse Element(s) Details


OsAffx.23907.1.S1_at

Description tigr:9629.m06318
TID=OsAffx.23907.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=undecaprenyl diphosphate synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6383010/11Dehydrodolichyl diphosphate synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019408biological_processdolichol biosynthesis
GO:0045547molecular_functiondehydrodolichyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23907.1.S1_at--690--1631Chr01:37361995..37362019 (25 bp)
AGCGGGTGATCCACGATAGCGTCGC
LOC_Os01g63830
OsAffx.23907.1.S1_at--887--9931NONE
TAGCGTCGCCGAGTTTCTGAGGGAA
NONE
OsAffx.23907.1.S1_at--302--3111Chr01:37361672..37361696 (25 bp)
AATTCGGCTACGTGTAATCGGTGAC
LOC_Os01g63830
OsAffx.23907.1.S1_at--1026--9751Chr01:37361658..37361682 (25 bp)
TAATCGGTGACAGCTCAAGGCTACC
LOC_Os01g63830
OsAffx.23907.1.S1_at--1094--2931Chr01:37361642..37361666 (25 bp)
AAGGCTACCGGTTTCTCTACAGAAG
LOC_Os01g63830
OsAffx.23907.1.S1_at--576--3311Chr01:37361580..37361604 (25 bp)
CACAGCTTGATCTGACACTGGCAAT
LOC_Os01g63830
OsAffx.23907.1.S1_at--570--9171Chr01:37361521..37361545 (25 bp)
TGCCGGAAGCTTGCCCAGAAGGTGC
LOC_Os01g63830
OsAffx.23907.1.S1_at--481--1491Chr01:37361368..37361392 (25 bp)
AGCAACTTCTTGCTGTGGCAGTCAG
LOC_Os01g63830
OsAffx.23907.1.S1_at--158--8511Chr01:37361353..37361377 (25 bp)
TGGCAGTCAGCGTACTCGGAGCTCT
LOC_Os01g63830
OsAffx.23907.1.S1_at--751--9671Chr01:37361325..37361349 (25 bp)
TCACCAACACGCTGTGGCCTGATTT
LOC_Os01g63830
OsAffx.23907.1.S1_at--197--911Chr01:37361295..37361319 (25 bp)
AGGCTGATTACCTCGAAGCGCTTTG
LOC_Os01g63830
Target Sequence 
AGCGGGTGATCCACGATAGCGTCGCCGAGTTTCTGAGGGAAGGAATTCGGCTACGTGTAATCGGTGACAGCTCAAGGCTA
CCGGTTTCTCTACAGAAGATTGCGAGAGAAGCCGAGGAGACCACGAGGAACAATTCACAGCTTGATCTGACACTGGCAAT
CAGCTACAGCGGGAGGAGGGACATCGTGCAGGCGTGCCGGAAGCTTGCCCAGAAGGTGCAGAGCAAGGCGCTCGCGGCGG
AGGACATCGACGAGGCGCTGTTCGCCGACGAGCTCGAGACGAGCTGCGCGGCCGACGAGTTCCCGTACCCCGACCTTCTC
ATCAGGACCAGCGGCGAGCTGAGGCTGAGCAACTTCTTGCTGTGGCAGTCAGCGTACTCGGAGCTCTTCTTCACCAACAC
GCTGTGGCCTGATTTCGGGGAGGCTGATTACCTCGAAGCGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis