Browse Element(s) Details


OsAffx.23941.1.S1_s_at

Description gb:NM_190208.1
DB_XREF= gi:34907499
GEN=B1099D03.20
TID=OsAffx.23941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1099D03.20 (B1099D03.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6654411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23941.1.S1_s_at--141--3951Chr01:38969781..38969805 (25 bp)
CGGCTCAAGCTGGTCAAGCTTAAGA
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--344--3411Chr01:38969751..38969775 (25 bp)
CAGAGAGACGAAGAGCAGTGCTCGA
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--938--831Chr01:38969709..38969733 (25 bp)
ATGGAGGCAATGTCGGCGTTTGCTC
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--1157--2971Chr01:38969701..38969725 (25 bp)
AATGTCGGCGTTTGCTCCGCCGCCT
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--776--5791Chr01:38969671..38969695 (25 bp)
GACGCAGCTGATGGTGCCGGTGGTC
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--315--10471Chr01:38969584..38969608 (25 bp)
TTACGGCCCGGTGATCGCCATGCTG
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--141--6231Chr01:38969460..38969484 (25 bp)
GAGGCCTGGGTGGAGCGCACGTGCG
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--1055--7291Chr01:38969431..38969455 (25 bp)
GTGCGTCGGCGCCAGAATCTTCTCC
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--522--1471Chr01:38969418..38969442 (25 bp)
AGAATCTTCTCCACGGCCGGTGGCG
LOC_Os01g66544
OsAffx.23941.1.S1_s_at--158--8212Chr12:889826..889845 (20 bp)
GGAAGGTGGCGAGGCATCAGCTGCA
NONE
OsAffx.23941.1.S1_s_at--1023--6191Chr01:38969376..38969400 (25 bp)
GAGGCATCAGCTGCACCGGCGGAGC
LOC_Os01g66544
Target Sequence 
CGGCTCAAGCTGGTCAAGCTTAAGATAAGCCAGAGAGACGAAGAGCAGTGCTCGAGGAAGAAGGCGTTGGCAATGGAGGC
AATGTCGGCGTTTGCTCCGCCGCCTCCGCCGACGCAGCTGATGGTGCCGGTGGTCGGGTACGGCGGAGGAGGAGGAGGAG
GCGCGGGGGAAGGGACGACGACGGCGGTGAGGGGGTCTTACGGCCCGGTGATCGCCATGCTGGCCGTCCTGGCCGTGCTG
GCGGCGGCGGCCGTCGCCGTCGGCCGCCTCTGCTTCGGCCGCCGCGTGCATCTCGGCCAGGCCGCCGCCGGCCACGACCT
CGAGGCCTGGGTGGAGCGCACGTGCGGCCCGTGCGTCGGCGCCAGAATCTTCTCCACGGCCGGTGGCGCGAAGGAGGAAG
GTGGCGAGGCATCAGCTGCACCGGCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis