Browse Element(s) Details


OsAffx.23943.1.S1_s_at

Description gb:NM_190210.1
DB_XREF= gi:34907503
GEN=B1099D03.22
TID=OsAffx.23943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1099D03.22 (B1099D03.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6657011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23943.1.S1_s_at--725--9411Chr01:38982574..38982598 (25 bp)
TCGGCCGAAGCGTAACGCCGGACAG
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--523--7731Chr01:38982549..38982573 (25 bp)
GGTGGACCGTACAGGTGCAGTTACC
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--1005--2111Chr01:38982539..38982563 (25 bp)
ACAGGTGCAGTTACCCGGGTTGCAA
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--483--10092Chr08:11892960..11892979 (20 bp)
TAGGCGGCCACGTGGCTGGCCACAT
NONE
OsAffx.23943.1.S1_s_at--167--891Chr01:38982414..38982438 (25 bp)
AGGCCGGAGGGCAATCACCCATGCA
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--319--371Chr01:38982401..38982425 (25 bp)
ATCACCCATGCAAAACGTGCGGGAA
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--138--711Chr01:38982342..38982366 (25 bp)
ATGAGGAAGCACTACGACCCCAAGA
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--337--1451Chr01:38982314..38982338 (25 bp)
AGAAGAAGCATGCTGGCCTTGTCCT
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--252--2431Chr01:38982214..38982238 (25 bp)
AAAAGCGGACGTGGATGAACATGAA
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--98--2731Chr01:38982191..38982215 (25 bp)
AAGCAGAGCAAGTGCCAATGGCGCC
LOC_Os01g66570
OsAffx.23943.1.S1_s_at--974--3991Chr01:38982133..38982157 (25 bp)
CGTGCGGATTTTTGGCGTGGATATA
LOC_Os01g66570
Target Sequence 
TCGGCCGAAGCGTAACGCCGGACAGGGTGGACCGTACAGGTGCAGTTACCCGGGTTGCAAGGGGGAGTACAGGACGCACC
AGGGGCTAGGCGGCCACGTGGCTGGCCACATCAACAGGGAGAAGCAGGCGGCCGCCGCCGCCCAGGGCGGCAGCGGCGCC
AGGCCGGAGGGCAATCACCCATGCAAAACGTGCGGGAAAGAGTTCTCGACGGGAGTGGCGCTCGGCGGCCACATGAGGAA
GCACTACGACCCCAAGAAGAAGAAGAAGCATGCTGGCCTTGTCCTTACCCTCTCCGTCGCGCCGCCTACGCCTGCACCTG
CTCCGTCCATCGCCGGAGCGGCATTGCCACCGGCGGAGGTAAAAGCGGACGTGGATGAACATGAAGCAGAGCAAGTGCCA
ATGGCGCCGGTGTCTCCGCCAGCTGAAGCGAGGGGAAATATCGTGCGGATTTTTGGCGTGGATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23943.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis