Browse Element(s) Details


OsAffx.23946.1.S1_at

Description tigr:9629.m06609
TID=OsAffx.23946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6663011/11S-domain receptor-like protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23946.1.S1_at--714--2991Chr01:39027931..39027955 (25 bp)
AATGAATCGCTTGCACCAAAGGTAG
LOC_Os01g66630
OsAffx.23946.1.S1_at--1161--8331Chr01:39027965..39027989 (25 bp)
GGCTGTCCAAGCTGATAGGTCATGA
LOC_Os01g66630
OsAffx.23946.1.S1_at--866--6531Chr01:39027988..39028012 (25 bp)
GATTTCAGCAGAGTCCTGACGTCGA
LOC_Os01g66630
OsAffx.23946.1.S1_at--828--2011Chr01:39028023..39028047 (25 bp)
ACTAGGGTACCTTGCACCCGAATGG
LOC_Os01g66630
OsAffx.23946.1.S1_at--20--1631Chr01:39028051..39028075 (25 bp)
AGCGGCCAGGCTATCACTTCAAAGG
LOC_Os01g66630
OsAffx.23946.1.S1_at--653--7771Chr01:39028197..39028221 (25 bp)
GGTGCACAGATTGTTCGACCCTGAG
LOC_Os01g66630
OsAffx.23946.1.S1_at--27--3811Chr01:39028249..39028273 (25 bp)
CTCGCCAGGGTGTTCAAGGTTGCCT
LOC_Os01g66630
OsAffx.23946.1.S1_at--252--1011Chr01:39028265..39028289 (25 bp)
AGGTTGCCTGCTGGTGCATTCAGAA
LOC_Os01g66630
OsAffx.23946.1.S1_at--245--7331Chr01:39028278..39028302 (25 bp)
GTGCATTCAGAATCACCCTGACTGT
LOC_Os01g66630
OsAffx.23946.1.S1_at--802--3851Chr01:39028295..39028319 (25 bp)
CTGACTGTAGGCCATCGATGCGAGA
LOC_Os01g66630
OsAffx.23946.1.S1_at--648--9831Chr01:39028343..39028367 (25 bp)
TAAAGCCTTTCGAAACACCACCTGT
LOC_Os01g66630
Target Sequence 
AATGAATCGCTTGCACCAAAGGTAGCAGATTTCGGGCTGTCCAAGCTGATAGGTCATGATTTCAGCAGAGTCCTGACGTC
GATGAGAGGAACACTAGGGTACCTTGCACCCGAATGGTTAAGCGGCCAGGCTATCACTTCAAAGGCAGATGTTTTCAGCT
ATGGCATGATGCTTTTTGAGATCATTTCAGGGAAGAGGAACATAGAGCACGGAGCTAGCACAAGTAGTTCAATGTTGATT
GCAGAGGAGATTCCAAAAGGAGGAGAGGTGCACAGATTGTTCGACCCTGAGCTGGTTGGTGATGCAAACCCAGAGGAGCT
CGCCAGGGTGTTCAAGGTTGCCTGCTGGTGCATTCAGAATCACCCTGACTGTAGGCCATCGATGCGAGAGATCATTCAGA
TTCTGGAAGGGCTAAAGCCTTTCGAAACACCACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis