Browse Element(s) Details


OsAffx.23969.1.S1_at

Description tigr:9629.m06770
TID=OsAffx.23969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6820011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68150Os.9025.3.S1_at10/111+39943995..39947432retrotransposon protein, putative, unclassified, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23969.1.S1_at--288--111Chr01:39966379..39966403 (25 bp)
ATTCACATCACAAGACATTGGCCTT
LOC_Os01g68200
OsAffx.23969.1.S1_at--957--11Chr01:39966395..39966419 (25 bp)
ATTGGCCTTGATGAGGAAGCACACG
LOC_Os01g68200
OsAffx.23969.1.S1_at--149--6051Chr01:39966427..39966451 (25 bp)
GAGATACCATAAGGCCGGGTGTGAC
LOC_Os01g68200
OsAffx.23969.1.S1_at--792--4491Chr01:39966440..39966464 (25 bp)
GCCGGGTGTGACTAGATTTGCTTTA
LOC_Os01g68200
OsAffx.23969.1.S1_at--938--10011Chr01:39966463..39966487 (25 bp)
TAGCATTTCTAACCTTGCAAAGCTT
LOC_Os01g68200
OsAffx.23969.1.S1_at--733--31Chr01:39966538..39966562 (25 bp)
ATTGTGGGAACAATGCACCCGCACT
LOC_Os01g68200
OsAffx.23969.1.S1_at--502--8231Chr01:39966576..39966600 (25 bp)
GGCAAGATAGCTACCTCTACACTAA
LOC_Os01g68200
OsAffx.23969.1.S1_at--485--8211Chr01:39966616..39966640 (25 bp)
GGAATGATGTTTCTCAGTGTTTGAA
LOC_Os01g68200
OsAffx.23969.1.S1_at--872--3451Chr01:39966630..39966749 (25 bp)
CAGTGTTTGAAGGTTTTTGAGCCAT
LOC_Os01g68200
OsAffx.23969.1.S1_at--1082--5851Chr01:39966743..39966767 (25 bp)
GAGCCATTAGTCAAAGTACTTCACA
LOC_Os01g68200
OsAffx.23969.1.S1_at--427--10851Chr01:39966853..39966877 (25 bp)
TTGGAGAACACCTACAATCCCATCT
LOC_Os01g68200
Target Sequence 
ATTCACATCACAAGACATTGGCCTTGATGAGGAAGCACACGAAGAAGAGAGATACCATAAGGCCGGGTGTGACTAGATTT
GCTTTAGCATTTCTAACCTTGCAAAGCTTGATTGAGAAGAAGCGTGAGCTAAGGGCAATGGCGCTTAGTGTGGAGTGGGA
TTGTGGGAACAATGCACCCGCACTAAAAAAAGCAAAAGGCAAGATAGCTACCTCTACACTAATGAGTAGGACCTTTTGGA
ATGATGTTTCTCAGTGTTTGAAGGTTTTTGAGCCATTAGTCAAAGTACTTCACATGGTTAATAGTGATGAGGCAAAGAAG
GAAATCATGGTAGCTGCAAAAAACTTGGAGAACACCTACAATCCCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis