Browse Element(s) Details


OsAffx.24022.1.S1_x_at

Description tigr:9629.m07228
TID=OsAffx.24022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g730205/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24022.1.S1_x_at--677--8531Chr01:42691041..42691065 (25 bp)
TGGACTGCGTGTACTGGACGCTCGC
NONE
OsAffx.24022.1.S1_x_at--709--2511Chr01:42691000..42691024 (25 bp)
AACTTGGGCTACTTCCTTTTGTGCG
NONE
OsAffx.24022.1.S1_x_at--470--10391Chr01:42690984..42691008 (25 bp)
TTTTGTGCGCCACCACGTACAAGTA
NONE
OsAffx.24022.1.S1_x_at--780--7351Chr01:42690931..42690955 (25 bp)
GTGAAGGCCCAGACACAGACTGACG
NONE
OsAffx.24022.1.S1_x_at--533--1391NONE
AGACTGACGACGCTGCTAGGCTTCT
NONE
OsAffx.24022.1.S1_x_at--552--10151NONE
TATCGCCAAGCCATCGTCAATGCAA
NONE
OsAffx.24022.1.S1_x_at--1137--2411Chr01:42688843..42688867 (25 bp)
AAAACTGGAGCTGCCCAGGAAGCTA
LOC_Os01g73020
OsAffx.24022.1.S1_x_at--201--8451Chr01:42688802..42688826 (25 bp)
GGCCAGCAAGGCCATGACTGAGCAA
LOC_Os01g73020
OsAffx.24022.1.S1_x_at--906--5411Chr01:42688777..42688801 (25 bp)
GAAGCCCGGCAAATACTAGGTATCA
LOC_Os01g73020
OsAffx.24022.1.S1_x_at--563--2971Chr01:42688544..42688568 (25 bp)
AATGGGAGCTTCTATCTCCAGTCGA
LOC_Os01g73020
OsAffx.24022.1.S1_x_at--207--9231Chr01:42688528..42688552 (25 bp)
TCCAGTCGAAAGTTCATCGGGCTAA
LOC_Os01g73020
Target Sequence 
TGGACTGCGTGTACTGGACGCTCGCCGTGCTCGCCGCCGTCAACTTGGGCTACTTCCTTTTGTGCGCCACCACGTACAAG
TACAACAATTACGGTGGTGACGATGGCAATGTGAAGGCCCAGACACAGACTGACGACGCTGCTAGGCTTCTCGCGAATCT
CCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTG
GAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGT
ATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTT
CTATCTCCAGTCGAAAGTTCATCGGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24022.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis